Related Links

General Software

Java: You'll need this to run Camino. Available for multiple formats. You need the java SDK, not the JRE.

Cygwin: A UNIX-like shell environment for windows that will allow the use of pipes and redirection making Camino as flexible as possible

TortoiseSVN: A Subversion client, implemented as a windows shell extension. You can use it to download the latest revision of Camino under Windows

Image processing

ITK-SNAP: Image viewer and segmentation tool, which allows manual and semi-automated definition of regions of interest.

Convert3D Command line tool for mathematical operations on images.

MRIcron: Updated version of MRIcro, includes the dcm2nii tool for converting DICOM data to NIfTI format.

Advanced Normalization Tools: ANTS is an open-source toolkit for multiple brain mapping tasks including registration and segmentation.

DTI-TK: a framework for diffusion tensor image registration and tract-specific analysis.

Visualization

Paraview: VTK-based visualization software.

ITK-SNAP: Image viewer and segmentation tool, which allows manual and semi-automated definition of regions of interest.

Camino-Trackvis: An interoperability tool that supports the tractography results from Camino to be viewed in TractVis.