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Sebastien Ourselin

Layout Image

Sebastien Ourselin

 

I am Head of the Translational Imaging Group (TIG) within CMIC.

My personal page moved here...

Interested to do a PhD or PostDoc in my group? Please send me an e-mail or look at the current positions we have available.


The 24th biennial International Conference on Information Processing in Medical Imaging (IPMI 2015) will be held at the Sabhal Mor Ostaig Conference Center in the Isle of Skye on June 28 - July 3, 2015. This conference is the latest in a series where novel developments in the acquisition, formation, analysis and display of medical images are presented, discussed, dissected, and extended.

 

 

 

Publications

2016

Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F., Thielemans, K. (2016). Maximum-likelihood joint image reconstruction/motion estimation in attenuation-corrected respiratory gated PET/CT using a single attenuation map. IEEE Transactions on Medical Imaging, 35 (1), 217-228. doi:10.1109/TMI.2015.2464156
Du, X., Allan, M., Dore, A., Ourselin, S., Hawkes, D., Kelly, J.D., Stoyanov, D. (2016). Combined 2D and 3D tracking of surgical instruments for minimally invasive and robotic-assisted surgery. International Journal of Computer Assisted Radiology and Surgery, 11 (6), 1109-1119. doi:10.1007/s11548-016-1393-4
Erlandsson, K., Liljeroth, M., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2016). Improved Parameter-Estimation With MRI-Constrained PET Kinetic Modeling: A Simulation Study. IEEE Transactions on Nuclear Science, doi:10.1109/TNS.2015.2507444
Lorenzi, M., Simpson, I.J., Mendelson, A.F., Vos, S.B., Cardoso, M.J., Modat, M., ...Ourselin, S. (2016). Multimodal Image Analysis in Alzheimer's Disease via Statistical Modelling of Non-local Intensity Correlations. Scientific Reports, 6 doi:10.1038/srep22161
Nikitichev, D.I., Xia, W., Hill, E., Mosse, C.A., Perkins, T., Konyn, K., ...Vercauteren, T. (2016). Music-of-light stethoscope: A demonstration of the photoacoustic effect. Physics Education, 51 (4), doi:10.1088/0031-9120/51/4/045015
Orasanu, E., Melbourne, A., Cardoso, M.J., Lomabert, H., Kendall, G.S., Robertson, N.J., ...Ourselin, S. (2016). Cortical folding of the preterm brain: A longitudinal analysis of extremely preterm born neonates using spectral matching. Brain and Behavior, doi:10.1002/brb3.488
Vasconcelos, F., Peebles, D., Ourselin, S., Stoyanov, D. (2016). Spatial calibration of a 2D/3D ultrasound using a tracked needle. International Journal of Computer Assisted Radiology and Surgery, 11 (6), 1091-1099. doi:10.1007/s11548-016-1392-5
Xia, W., Ginsberg, Y., West, S.J., Nikitichev, D.I., Ourselin, S., David, A.L., Desjardins, A.E. (2016). Coded excitation ultrasonic needle tracking: An in vivo study. Medical Physics, 43 (7), 4065-4073. doi:10.1118/1.4953205

2015

Bocchetta, M., Gordon, E., Manning, E., Barnes, J., Cash, D.M., Espak, M., ...Warren, J.D. (2015). Detailed volumetric analysis of the hypothalamus in behavioral variant frontotemporal dementia. Journal of Neurology, 262 (12), 2635-2642. doi:10.1007/s00415-015-7885-2
Bocchetta, M., Gordon, E., Marshall, C.R., Slattery, C.F., Cardoso, M.J., Cash, D.M., ...Frisoni, G.B. (2015). The habenula: an under-recognised area of importance in frontotemporal dementia?. Journal of neurology, neurosurgery, and psychiatry,
Bousse, A., Bertolli, O., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B., Thielemans, K. (2015). Direct Joint Motion Estimation/Image Reconstruction in Attenuation-Corrected Gated PET/CT Using a Single CT.
Bousse, A., Jiao, J., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B.F. (2015). Joint direct motion estimation/kinetic images reconstruction from gated PET DATA.
Burgos, N., Cardoso, M.J., Thielemans, K., Modat, M., Dickson, J., Schott, J.M., ...Ourselin, S. (2015). Multi-contrast attenuation map synthesis for PET/MR scanners: assessment on FDG and Florbetapir PET tracers. European Journal of Nuclear Medicine and Molecular Imaging, 42 (9), 1447-1458. doi:10.1007/s00259-015-3082-x
Cardoso, M.J., Modat, M., Vercauteren, T., Ourselin, S. (2015). Scale factor point spread function matching: Beyond aliasing in image resampling.
Cardoso, M.J., Modat, M., Wolz, R., Melbourne, A., Cash, D., Rueckert, D., Ourselin, S. (2015). Geodesic Information Flows: Spatially-Variant Graphs and Their Application to Segmentation and Fusion. IEEE Transactions on Medical Imaging, 34 (9), 1976-1988. doi:10.1109/TMI.2015.2418298
Cash, D.M., Frost, C., Iheme, L.O., Ünay, D., Kandemir, M., Fripp, J., ...Fischl, B. (2015). Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge. NeuroImage, 123 149-164. doi:10.1016/j.neuroimage.2015.07.087
Chadebecq, F., Vercauteren, T., Wimalasundera, R., Attilakos, G., David, A.L., Deprest, J., ...Stoyanov, D. (2015). Practical Dry Calibration With Medium Adaptation ForFluid-Immersed Endoscopy. Presented at: Hamlyn Symposium on Medical Robotics London.
Clarkson, M.J., Zombori, G., Thompson, S., Totz, J., Song, Y., Espak, M., ...Ourselin, S. (2015). The NifTK Software Platform for Image Guided Interventions. International Journal of Computer Assisted Radiology and Surgery, 10 (3), 301-316. doi:10.1007/s11548-014-1124-7
Dos Santos, G.S., Maneas, E., Nikitichev, D., Barburas, A., David, A.L., Deprest, J., ...Ourselin, S. (2015). A Registration Approach to Endoscopic Laser Speckle Contrast Imaging for Intrauterine Visualisation of Placental Vessels.
Downey, L.E., Mahoney, C.J., Buckley, A.H., Golden, H.L., Henley, S.M., Schmitz, N., ...Fox, N.C. (2015). White matter tract signatures of impaired social cognition in frontotemporal lobar degeneration. NeuroImage: Clinical, 8 640-651. doi:10.1016/j.nicl.2015.06.005
Eaton-Rosen, Z., Melbourne, A., Orasanu, E., Cardoso, M.J., Modat, M., Bainbridge, A., ...Ourselin, S. (2015). Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI. NeuroImage, doi:10.1016/j.neuroimage.2015.02.010
Eaton-Rosen, Z., Melbourne, A., Orasanu, E., Cardoso, M.J., Modat, M., Bainbridge, A., ...Ourselin, S. (2015). Longitudinal measurement of the developing grey matter in preterm subjects using multi-modal MRI. NeuroImage, 111 580-589. doi:10.1016/j.neuroimage.2015.02.010
Ehrhardt, M.J., Thielemans, K., Pizarro, L., Atkinson, D., Ourselin, S., Hutton, B.F., Arridge, S.R. (2015). Joint reconstruction of PET-MRI by exploiting structural similarity. Inverse Problems, 31 (1), doi:10.1088/0266-5611/31/1/015001
Jack, C.R., Barnes, J., Bernstein, M.A., Borowski, B.J., Brewer, J., Clegg, S., ...DeCarli, C. (2015). Magnetic resonance imaging in Alzheimer's Disease Neuroimaging Initiative 2. Alzheimer's and Dementia, 11 (7), 740-756. doi:10.1016/j.jalz.2015.05.002
Johnsen, S.F., Taylor, Z.A., Clarkson, M.J., Hipwell, J., Modat, M., Eiben, B., ...Hawkes, D.J. (2015). NiftySim: A GPU-based nonlinear finite element package for simulation of soft tissue biomechanics.. International Journal of Computer Assisted Radiology and Surgery, 10 (7), 1077-1095. doi:10.1007/s11548-014-1118-5
Johnsen, S.F., Taylor, Z.A., Han, L., Hu, Y., Clarkson, M.J., Hawkes, D.J., Ourselin, S. (2015). Detection and modelling of contacts in explicit finite-element simulation of soft tissue biomechanics. International Journal of Computer Assisted Radiology and Surgery, 10 (11), 1873-1891. doi:10.1007/s11548-014-1142-5
Johnsen, S.F., Thompson, S., Clarkson, M.J., Modat, M., Song, Y., Totz, J., ...Hawkes, D.J. (2015). Database-based estimation of liver deformation under pneumoperitoneum for surgical image-guidance and simulation.
Klemt, C., Modat, M., Pichat, J., Cardoso, M.J., Henckel, J., Hart, A., Ourselin, S. (2015). Automatic assessment of volume asymmetries applied to hip abductor muscles in patients with hip arthroplasty.
Kochan, M., Daga, P., Burgos, N., White, M., Cardoso, M.J., Mancini, L., ...Yousry, T. (2015). Simulated field maps for susceptibility artefact correction in interventional MRI. International Journal of Computer Assisted Radiology and Surgery, 10 (9), 1405-1416. doi:10.1007/s11548-015-1253-7
Leung, K.K., Malone, I.M., Ourselin, S., Gunter, J.L., Bernstein, M.A., Thompson, P.M., ...Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2015). Effects of changing from non-accelerated to accelerated MRI for follow-up in brain atrophy measurement.. NeuroImage, 107 46-53. doi:10.1016/j.neuroimage.2014.11.049
Ma, D., Cardoso, M.J., Zuluaga, M.A., Modat, M., Powell, N., Wiseman, F., ...Ourselin, S. (2015). Grey matter sublayer thickness estimation in the mouse cerebellum.
Magerkurth, J., Mancini, L., Penny, W., Flandin, G., Ashburner, J., Micallef, C., ...Buckley, C. (2015). Objective Bayesian fMRI analysis - a pilot study in different clinical environments. Frontiers in Neuroscience, 9 (APR), doi:10.3389/fnins.2015.00168
Mahoney, C.J., Simpson, I.J.A., NIcholas, J.M., Fletcher, P.D., Downey, L.E., Golden, H.L., ...Schott, J.M. (2015). Longitudinal diffusion tensor imaging in frontotemporal dementia. Annals of Neurology, 77 (1), 33-46. doi:10.1002/ana.24296
Manber, R., Thielemans, K., Hutton, B.F., Barnes, A., Ourselin, S., Arridge, S., ...Atkinson, D. (2015). Practical PET respiratory motion correction in clinical PET/MR. Journal of Nuclear Medicine, 56 (6), 890-896. doi:10.2967/jnumed.114.151779
Maneas, E., Sato dos Santos, G., Deprest, J., Wimalasundera, R., David, A.L., Vercauteren, T., Ourselin, S. (2015). Adaptive Filtering of Fibre-optic Fetoscopic Images for Fetal Surgery. Presented at: Hamlyn Symposium on Medical Robotics London.
Nowell, M., Rodionov, R., Zombori, G., Sparks, R., Winston, G., Kinghorn, J., ...McEvoy, A.W. (2015). Utility of 3D multimodality imaging in the implantation of intracranial electrodes in epilepsy. Epilepsia, 56 (3), 403-413. doi:10.1111/epi.12924
Nowell, M., Vos, S.B., Sidhu, M., Wilcoxen, K., Sargsyan, N., Ourselin, S., Duncan, J.S. (2015). Meyer's loop asymmetry and language lateralisation in epilepsy. Journal of Neurology, Neurosurgery and Psychiatry, doi:10.1136/jnnp-2015-311161
Orasanu, E., Melbourne, A., Lombaert, H., Cardoso, M.J., Johnsen, S.F., Kendall, G.S., ...Ourselin, S. (2015). Prefrontal cortical folding of the preterm brain: A longitudinal analysis of preterm-born neonates. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8682 3-12. doi:10.1007/978-3-319-14905-9_1
Petitjean, C., Zuluaga, M.A., Bai, W., Dacher, J.N., Grosgeorge, D., Caudron, J., ...Chen, H.C. (2015). Right ventricle segmentation from cardiac MRI: a collation study.. Medical Image Analysis, 19 (1), 187-202. doi:10.1016/j.media.2014.10.004
Prados, F., Cardoso, M.J., Leung, K.K., Cash, D.M., Modat, M., Fox, N.C., ...Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2015). Measuring brain atrophy with a generalized formulation of the boundary shift integral.. Neurobiology of Aging, 36 (S1), S81-S90. doi:10.1016/j.neurobiolaging.2014.04.035
Pratt, R., Deprest, J., Vercauteren, T., Ourselin, S., David, A.L. (2015). Computer-assisted surgical planning and intraoperative guidance in fetal surgery: A systematic review. Prenatal Diagnosis, 35 (12), 1159-1166. doi:10.1002/pd.4660
Rodionov, R., Bartlett, P.A., He, C., Vos, S.B., Focke, N.K., Ourselin, S.G., Duncan, J.S. (2015). T2 mapping outperforms normalised FLAIR in identifying hippocampal sclerosis. NeuroImage: Clinical, 7 788-791. doi:10.1016/j.nicl.2015.03.004
Rohrer, J.D., Nicholas, J.M., Cash, D.M., van Swieten, J., Dopper, E., Jiskoot, L., ...Clegg, S. (2015). Presymptomatic cognitive and neuroanatomical changes in genetic frontotemporal dementia in the Genetic Frontotemporal dementia Initiative (GENFI) study: A cross-sectional analysis. The Lancet Neurology, 14 (3), 253-262. doi:10.1016/S1474-4422(14)70324-2
Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Ourselin, S., Arridge, S., Hutton, B.F. (2015). Incorporation of MRI-AIF Information for Improved Kinetic Modelling of Dynamic PET Data. IEEE Transactions on Nuclear Science, 62 (3), 612-618. doi:10.1109/TNS.2015.2426952
Sindhwani, N., Feola, A., de Keyzer, F., Claus, F., Callewaert, G., Urbankova, I., ...Deprest, J. (2015). Three-dimensional analysis of implanted magnetic-resonance-visible meshes. International Urogynecology Journal and Pelvic Floor Dysfunction, doi:10.1007/s00192-015-2681-1
Song, Y., Totz, J., Thompson, S., Johnsen, S., Barratt, D., Schneider, C., ...Hawkes, D. (2015). Locally rigid, vessel-based registration for laparoscopic liver surgery. International Journal of Computer Assisted Radiology and Surgery, 10 (12), 1951-1961. doi:10.1007/s11548-015-1236-8
Sudre, C.H., Cardoso, M.J., Bouvy, W.H., Biessels, G.J., Barnes, J., Ourselin, S. (2015). Bayesian Model Selection for Pathological Neuroimaging Data Applied to White Matter Lesion Segmentation. IEEE Transactions on Medical Imaging, 34 (10), 2079-2102. doi:10.1109/TMI.2015.2419072
Thompson, S., Totz, J., Song, Y., Stoyanov, D., Ourselin, S., Hawkes, D., Clarkson, M. (2015). Accuracy validation of an image guided laparoscopy system for liver resection.
Tobon-Gomez, C., Geers, A.J., Peters, J., Weese, J., Pinto, K., Karim, R., ...Sandoval, Z. (2015). Benchmark for Algorithms Segmenting the Left Atrium From 3D CT and MRI Datasets. IEEE Transactions on Medical Imaging, 34 (7), 1460-1473. doi:10.1109/TMI.2015.2398818
Tobon-Gomez, C., Zuluaga, M.A., Chubb, H., Williams, S.E., Butakoff, C., Karim, R., ...Rhode, K. (2015). Standardised unfold map of the left atrium: Regional definition for multimodal image analysis. Journal of Cardiovascular Magnetic Resonance, 1-3. doi:10.1186/1532-429X-17-S1-P41
Veiga, C., Alshaikhi, J., Amos, R., Lourenço, A.M., Modat, M., Ourselin, S., ...McClelland, J.R. (2015). Cone-Beam Computed Tomography and Deformable Registration-Based “Dose of the Day” Calculations for Adaptive Proton Therapy. International Journal of Particle Therapy, 2 (2), 404-414. doi:10.14338/IJPT-14-00024.1
Veiga, C., Lourenço, A.M., Mouinuddin, S., Van Herk, M., Modat, M., Ourselin, S., ...McClelland, J.R. (2015). Toward adaptive radiotherapy for head and neck patients: Uncertainties in dose warping due to the choice of deformable registration algorithm. Medical Physics, 42 (2), 760-769. doi:10.1118/1.4905050
Wang, G., Zuluaga, M.A., Pratt, R., Aertsen, M., David, A.L., Deprest, J., ...Ourselin, S. (2015). Slic-seg: Slice-by-slice segmentation propagation of the placenta in fetal MRI using one-plane scribbles and online learning. Presented at: .
Wang, L., Yushkevich, P., Ourselin, S. (2015). Guest editorial. Neurobiology of Aging, 36 (S1), S1-S2. doi:10.1016/j.neurobiolaging.2014.09.021
Wells, J.A., O'Callaghan, J.M., Holmes, H.E., Powell, N.M., Johnson, R.A., Siow, B., ...Golay, X. (2015). In vivo imaging of tau pathology using multi-parametric quantitative MRI. NeuroImage, 111 369-378. doi:10.1016/j.neuroimage.2015.02.023
Weston, P.S.J., Paterson, R.W., Modat, M., Burgos, N., Cardoso, M.J., Magdalinou, N., ...Bomanji, J.B. (2015). Using florbetapir positron emission tomography to explore cerebrospinal fluid cut points and gray zones in small sample sizes. Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring, 1 (4), 440-446. doi:10.1016/j.dadm.2015.10.001
Weston, P.S.J., Simpson, I.J.A., Ryan, N.S., Ourselin, S., Fox, N.C. (2015). Diffusion imaging changes in grey matter in Alzheimer's disease: A potential marker of early neurodegeneration. Alzheimer's Research and Therapy, doi:10.1186/s13195-015-0132-3
Xia, W., Maneas, E., Nikitichev, D.I., Mosse, C.A., Dos Santos, G.S., Vercauteren, T., ...Beard, P.C. (2015). Interventional photoacoustic imaging of the human placenta with ultrasonic tracking for minimally invasive fetal surgeries. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). (pp. 371-378). .
Xia, W., Mosse, C.A., Colchester, R.J., Mari, J.M., Nikitichev, D.I., West, S.J., ...Desjardins, A.E. (2015). Fiber optic photoacoustic probe with ultrasonic tracking for guiding minimally invasive procedures. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 9539 doi:10.1117/12.2182647
Xia, W., Nikitichev, D.I., Mari, J.M., West, S.J., Ourselin, S., Beard, P.C., Desjardins, A.E. (2015). An interventional multispectral photoacoustic imaging platform for the guidance of minimally invasive procedures.
Young, A.L., Oxtoby, N.P., Ourselin, S., Schott, J.M., Alexander, D.C. (2015). A simulation system for biomarker evolution in neurodegenerative disease. Medical Image Analysis, 26 (1), 47-56. doi:10.1016/j.media.2015.07.004
Ziegler, G., Penny, W.D., Ridgway, G.R., Ourselin, S., Friston, K.J. (2015). Estimating anatomical trajectories with Bayesian mixed-effects modeling. NeuroImage, 121 51-68. doi:10.1016/j.neuroimage.2015.06.094
Zuluaga, M.A., Rodionov, R., Nowell, M., Achhala, S., Zombori, G., Mendelson, A.F., ...Duncan, J.S. (2015). Stability, structure and scale: improvements in multi-modal vessel extraction for SEEG trajectory planning. International Journal of Computer Assisted Radiology and Surgery, 10 (8), 1227-1237. doi:10.1007/s11548-015-1174-5

2014

Allan, M., Thompson, S., Clarkson, M., Ourselin, S., Hawkes, D., Kelly, J., Stoyanov, D. (2014). 2D-3D pose tracking of rigid instruments in minimally invasive surgery.
Bragman, F.J.S., McClelland, J.R., Modat, M., Ourselin, S., Hurst, J.R., Hawkes, D.J. (2014). Multi-scale analysis of imaging features and its use in the study of COPD exacerbation susceptible phenotypes. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8675 LNCS (PART 3), 417-424. doi:10.1007/978-3-319-10443-0_53
Burgos, N., Cardoso, M.J., Thielemans, K., Modat, M., Pedemonte, S., Dickson, J., ...Schott, J.M. (2014). Attenuation correction synthesis for hybrid PET-MR scanners: application to brain studies.. IEEE Transactions on Medical Imaging, 33 (12), 2332-2341. doi:10.1109/TMI.2014.2340135
Cash, D.M., Rohrer, J.D., Ryan, N.S., Ourselin, S., Fox, N.C. (2014). Imaging endpoints for clinical trials in Alzheimer's disease. Alzheimer's Research and Therapy, 6 (9), doi:10.1186/s13195-014-0087-9
Daga, P., Pendse, T., Modat, M., White, M., Mancini, L., Winston, G.P., ...Drobnjak, I. (2014). Susceptibility artefact correction using dynamic graph cuts: application to neurosurgery.. Medical Image Analysis, 18 (7), 1132-1142. doi:10.1016/j.media.2014.06.008
Eaton-Rosen, Z., Melbourne, A., Orasanu, E., Modat, M., Cardoso, M.J., Bainbridge, A., ...Ourselin, S. (2014). Longitudinal measurement of the developing thalamus in the preterm brain using multi-modal MRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8674 LNCS (PART 2), 276-283. doi:10.1007/978-3-319-10470-6_35
Fuin, N., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B.F. (2014). Efficient determination of the uncertainty for the optimization of SPECT system design: a subsampled fisher information matrix.. IEEE Transactions on Medical Imaging, 33 (3), 618-635. doi:10.1109/TMI.2013.2292805
Hamy, V., Modat, M., Dikaios, N., Cleary, J., Punwani, S., Shipley, R., ...Melbourne, A. (2014). Multi-modal pharmacokinetic modelling for DCE-MRI: using diffusion weighted imaging to constrain the local arterial input function.
Han, L., Hipwell, J., Eiben, B., Barratt, D.C., Ourselin, S., Hawkes, D.J. (2014). A Non-linear Biomechanical Model Based Registration Method for Aligning Prone and Supine MR Breast Images. IEEE Transactions on Medical Imaging, 33 (3), 682-694. doi:10.1109/TMI.2013.2294539
Jiao, J., Bousse, A., Thielemans, K., Markiewicz, P., Burgos, N., Atkinson, D., ...Ourselin, S. (2014). Joint parametric reconstruction and motion correction framework for dynamic PET data.
Kazantsev, D., Ourselin, S., Hutton, B.F., Lionheart, W.R.B., Arridge, S.A. (2014). A novel technique to incorporate structural prior information into multi-modal tomographic reconstruction. Inverse Problems, 30 (6), doi:10.1088/0266-5611/30/6/065004
Kendall, G.S., Melbourne, A., Johnson, S., Price, D., Bainbridge, A., Gunny, R., ...Marlow, N. (2014). White matter NAA/Cho and Cho/Cr ratios at MR spectroscopy are predictive of motor outcome in preterm infants.. Radiology, 271 (1), 230-238. doi:10.1148/radiol.13122679
Kochan, M., Daga, P., Burgos, N., White, M., Cardoso, M.J., Mancini, L., ...Yousry, T. (2014). Simulated Field Maps: Toward Improved Susceptibility Artefact Correction in Interventional MRI.
Liu, L., Shi, W., Rueckert, D., Hu, M., Ourselin, S., Zhuang, X. (2014). Coronary centerline extraction based on ostium detection and model-guided directional minimal path. 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, 133-136.
Lötjönen, J., Ledig, C., Koikkalainen, J., Wolz, R., Thurfjell, L., Soininen, H., ...Rueckert, D. (2014). Extended boundary shift integral. 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, 854-857.
Macdonald, K.E., Leung, K.K., Bartlett, J.W., Blair, M., Malone, I.B., Barnes, J., ...Alzheimer’s Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2014). Automated template-based hippocampal segmentations from MRI: the effects of 1.5T or 3T field strength on accuracy.. Neuroinformatics, 12 (3), 405-412. doi:10.1007/s12021-013-9217-y
Ma, D., Cardoso, M.J., Modat, M., Powell, N., Wells, J., Holmes, H., ...Lythgoe, M.F. (2014). Automatic Structural Parcellation of Mouse Brain MRI Using Multi-Atlas Label Fusion. PLoS ONE, 9 (1), doi:10.1371/journal.pone.0086576
Mahoney, C.J., Ridgway, G.R., Malone, I.B., Downey, L.E., Beck, J., Kinnunen, K.M., ...Schott, J.M. (2014). Profiles of white matter tract pathology in frontotemporal dementia.. Human Brain Mapping, 35 (8), 4163-4179. doi:10.1002/hbm.22468
Manning, E.N., Barnes, J., Cash, D.M., Bartlett, J.W., Leung, K.K., Ourselin, S., ...Alzheimer's Disease NeuroImaging, I.n.i.t.i.a.t.i.v.e. (2014). APOE ε4 is associated with disproportionate progressive hippocampal atrophy in AD.. PLoS ONE, 9 (5), doi:10.1371/journal.pone.0097608
Melbourne, A., Eaton-Rosen, Z., De Vita, E., Bainbridge, A., Cardoso, M.J.O., Price, D., ...Marlow, N. (2014). Multi-modal measurement of the myelin-to-axon diameter g-ratio in preterm-born neonates and adult controls.
Melbourne, A., Kendall, G.S., Cardoso, M.J., Gunny, R., Robertson, N.J., Marlow, N., Ourselin, S. (2014). Preterm birth affects the developmental synergy between cortical folding and cortical connectivity observed on multimodal MRI.. NeuroImage, 89 23-34. doi:10.1016/j.neuroimage.2013.11.048
Mendelson, A.F., Zuluaga, M.A., Thurfjell, L., Hutton, B.F., Ourselin, S. (2014). The empirical variance estimator for computer aided diagnosis: Lessons for algorithm validation. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8674 LNCS (PART 2), 236-243. doi:10.1007/978-3-319-10470-6_30
Mertzanidou, T., Hipwell, J., Johnsen, S., Han, L., Eiben, B., Taylor, Z., ...Bick, U. (2014). MRI to X-ray mammography intensity-based registration with simultaneous optimisation of pose and biomechanical transformation parameters.. Medical Image Analysis, 18 (4), 674-683. doi:10.1016/j.media.2014.03.003
Modat, M., Cash, D.M., Daga, P., Winston, G.P., Duncan, J.S., Ourselin, S. (2014). Global image registration using a symmetric block-matching approach.. Journal of medical imaging (Bellingham, Wash.), 1 (2), 024003-.
Modat, M., Cash, D.M., Daga, P., Winston, G.P., Duncan, J.S., Ourselin, S. (2014). A symmetric block-matching framework for global registration.
Modat, M., Simpson, I.J.A., Cardoso, M.J., Cash, D.M., Toussaint, N., Fox, N.C., Ourselin, S. (2014). Simulating neurodegeneration through longitudinal population analysis of structural and diffusion weighted MRI data. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8675 LNCS (PART 3), 57-64. doi:10.1007/978-3-319-10443-0_8
Nowell, M., Rodionov, R., Diehl, B., Wehner, T., Zombori, G., Kinghorn, J., ...McEvoy, A. (2014). A novel method for implementation of frameless StereoEEG in epilepsy surgery.. Neurosurgery, doi:10.1227/NEU.0000000000000544
Nowell, M., Rodionov, R., Zombori, G., Ourselin, S., Micallef, C., Diehl, B., ...Duncan, J. (2014). THE USE OF 3D MULTIMODALITY IMAGING IN THE PRESURGICAL EVALUATION OF EPILEPSY.
Orasanu, E., Melbourne, A., Cardoso, M.J., Modat, M., Taylor, A.M., Thayyil, S., Ourselin, S. (2014). Brain volume estimation from post-mortem newborn and fetal MRI.. NeuroImage: Clinical, 6 438-444. doi:10.1016/j.nicl.2014.10.007
Ourselin, S., Modat, M. (2014). Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8545 LNCS
Oxtoby, N.P., Young, A.L., Fox, N.C., Daga, P., Cash, D.M., Ourselin, S., ...Alexander, D.C. (2014). Learning imaging biomarker trajectories from noisy Alzheimer’s disease data using a Bayesian multilevel model.
Parker, C.S., Deligianni, F., Cardoso, M.J., Daga, P., Modat, M., Dayan, M., ...Clayden, J.D. (2014). Consensus between pipelines in structural brain networks.. PLoS ONE, 9 (10), doi:10.1371/journal.pone.0111262
Porter, M.-.C., De Vita, E., Simpson, I., Ourselin, S., Lowe, J., Franko, E., ...Collinge, J. (2014). Multi-parameter MRI analysis in the national prion monitoring cohort. PRION, 8 111-112.
Prados, F., Cardoso, M.J., Cash, D.M., Modat, M., Wheeler-Kingshott, C.A.M., Ourselin, S. (2014). Robust and fully-automated atrophy measures for multiple sclerosis disease..
Prados, F., Cardoso, M.J., MacManus, D., Wheeler-Kingshott, C.A., Ourselin, S. (2014). A modality-agnostic patch-based technique for lesion filling in multiple sclerosis.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 17 (Pt 2), 781-788.
Prados, F., Cardoso, M.J.O., MacManus, D., Wheeler-Kingshott, C.A.M., Ourselin, S. (2014). A modality-agnostic patch-based technique for lesion filling in multiple sclerosis. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 17 781-788.
Samson, R.S., Cardoso, M.J., Muhlert, N., Sethi, V., Ron, M.A., Ourselin, S., ...Wheeler-Kingshott, C.A.M. (2014). Reproducibility of in vivo inner and outer cortical magnetisation transfer ratio measurements..
Samson, R.S., Cardoso, M.J., Muhlert, N., Sethi, V., Wheeler-Kingshott, C.A., Ron, M., ...Chard, D.T. (2014). Investigation of outer cortical magnetisation transfer ratio abnormalities in multiple sclerosis clinical subgroups.. Multiple Sclerosis, 20 (10), 1322-1330. doi:10.1177/1352458514522537
Sari, H., Erlandsson, K., Thielemans, K., Atkinson, D., Arridge, S., Ourselin, S., Hutton, B. (2014). Incorporation of MRI-AIF information for improved kinetic modelling of dynamic PET data.. EJNMMI physics, 1 (Suppl 1), A43-.
Sohal, M., Duckett, S.G., Zhuang, X., Shi, W., Ginks, M., Shetty, A., ...Smith, N. (2014). A prospective evaluation of cardiovascular magnetic resonance measures of dyssynchrony in the prediction of response to cardiac resynchronization therapy.. Journal of Cardiovascular Magnetic Resonance, 16 (1), doi:10.1186/s12968-014-0058-0
Sudre, C.H., Cardoso, M.J., Bouvy, W., Biessels, G.J., Barnes, J., Ourselin, S. (2014). Bayesian model selection for pathological data. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 8673 LNCS (PART 1), 323-330. doi:10.1007/978-3-319-10404-1_41
Sudre, C.H., Cardoso, M.J., Ourselin, S. (2014). Bilayered Anatomically-constrained Split-and-Merge Expectation Maximisation Algorithm (BiASM) for Brain Segmentation.
Thomas, B.A., Erlandsson, K., Bousse, A., Hutton, B.F., Drobnjak, I., Pedemonte, S., ...Reilhac-Laborde, A. (2014). Framework for the construction of a Monte Carlo simulated brain PET-MR image database. Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 734 (PART B), 162-165. doi:10.1016/j.nima.2013.08.063
Thomas, J.B., Brier, M.R., Bateman, R.J., Snyder, A.Z., Benzinger, T.L., Xiong, C., ...Mayeux, R. (2014). Functional connectivity in autosomal dominant and late-onset Alzheimer disease.. JAMA Neurology, 71 (9), 1111-1122. doi:10.1001/jamaneurol.2014.1654
Veiga, C., McClelland, J., Moinuddin, S., Lourenço, A., Ricketts, K., Annkah, J., ...Royle, G. (2014). Toward adaptive radiotherapy for head and neck patients: Feasibility study on using CT-to-CBCT deformable registration for "dose of the day" calculations.. Medical Physics, 41 (3), doi:10.1118/1.4864240
Veiga, C., Moinuddin, S., Ricketts, K., Modat, M., Ourselin, S., D'Souza, D., Royle, G.J. (2014). Towards adaptive radiotherapy for head and neck patients: validation of an in-house deformable registration algorithm. Journal of Physics: Conference Series, 489 (1), doi:10.1088/1742-6596/489/1/012083
Winston, G.P., Daga, P., White, M.J., Micallef, C., Miserocchi, A., Mancini, L., ...Symms, M.R. (2014). Preventing visual field deficits from neurosurgery.. Neurology, 83 (7), 604-611. doi:10.1212/WNL.0000000000000685
Young, A.L., Oxtoby, N.P., Daga, P., Cash, D.M., Fox, N.C., Ourselin, S., ...Alzheimer’s Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2014). A data-driven model of biomarker changes in sporadic Alzheimer's disease.. Brain, 137 (9), 2564-2577. doi:10.1093/brain/awu176
Zombori, G., Rodionov, R., Nowell, M., Zuluaga, M., Clarkson, M., Micallef, C., ...McEvoy, A. (2014). A computer assisted planning system for the placement of sEEG electrodes in the treatment of epilepsy.
Zuluaga, M.A., Mendelson, A., Cardoso, M.J., Taylor, A.M., Ourselin, S. (2014). Multi-atlas based pathological stratification of D-TGA congenital heart disease. 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014, 109-112.
Zuluaga, M.A., Rodionov, R., Nowell, M., Achhala, S., Zombori, G., Cardoso, M.J.O., ...Ourselin, S. (2014). SEEG trajectory planning: combining stability, structure and scale in vessel extraction.

2013

(2013). Functional Imaging and Modeling of the Heart - 7th International Conference, FIMH 2013, London, UK, June 20-22, 2013. Proceedings.
Allan, M., Ourselin, S., Thompson, S., Hawkes, D.J., Kelly, J., Stoyanov, D. (2013). Toward detection and localization of instruments in minimally invasive surgery.. IEEE Transactions on Biomedical Engineering, 60 (4), 1050-1058. doi:10.1109/TBME.2012.2229278
Andrews, K.A., Modat, M., Macdonald, K.E., Yeatman, T., Cardoso, M.J., Leung, K.K., ...Fox, N.C. (2013). Atrophy Rates in Asymptomatic Amyloidosis: Implications for Alzheimer Prevention Trials. PLoS ONE, 8 (3), doi:10.1371/journal.pone.0058816
Benzinger, T.L., Blazey, T., Jack, C.R., Koeppe, R.A., Su, Y., Xiong, C., ...Bateman, R.J. (2013). Regional variability of imaging biomarkers in autosomal dominant Alzheimer's disease.. Proceedings of the National Academy of Sciences of the United States of America, 110 (47), doi:10.1073/pnas.1317918110
Burgos, N., Cardoso, M.J., Modat, M., Pedemonte, S., Dickson, J., Barnes, A., ...Hutton, B.F. (2013). Attenuation correction synthesis for hybrid PET-MR scanners..
Cardoso, M.J., Melbourne, A., Kendall, G.S., Modat, M., Robertson, N.J., Marlow, N., Ourselin, S. (2013). AdaPT: An adaptive preterm segmentation algorithm for neonatal brain MRI.. NeuroImage, 65 97-108. doi:10.1016/j.neuroimage.2012.08.009
Cash, D.M., Ridgway, G.R., Liang, Y., Ryan, N.S., Kinnunen, K.M., Yeatman, T., ...Thompson, P.M. (2013). The pattern of atrophy in familial Alzheimer disease: volumetric MRI results from the DIAN study.. Neurology, 81 (16), 1425-1433. doi:10.1212/WNL.0b013e3182a841c6
Daga, P., Modat, M., Winston, G., White, M., Mancini, L., Mcevoy, A.W., ...Ourselin, S. (2013). Susceptibility artefact correction by combining B0 field maps and non-rigid registration using graph cuts.
Eiben, B., Han, L., Hipwell, J., Mertzanidou, T., Kabus, S., Buelow, T., ...Keshtgar, M. (2013). Biomechanically guided prone-to-supine image registration of breast MRI using an estimated reference state.
Garvey, C.C., Cahill, N.D., Melbourne, A., Tanner, C., Ourselin, S., Hawkes, D.J. (2013). Nonrigid image registration with two-sided space-fractional partial differential equations. 2013 IEEE International Conference on Image Processing, ICIP 2013 - Proceedings, 747-751. doi:10.1109/ICIP.2013.6738154
Hoang Duc, A.K., Modat, M., Leung, K.K., Cardoso, M.J., Barnes, J., Kadir, T., Ourselin, S. (2013). Using Manifold Learning for Atlas Selection in Multi-Atlas Segmentation. PLoS ONE, 8 (8), doi:10.1371/journal.pone.0070059
Hutton, B.F., Thomas, B.A., Erlandsson, K., Bousse, A., Reilhac-Laborde, A., Kazantsev, D., ...Ourselin, S. (2013). What approach to brain partial volume correction is best for PET/MRI?. Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 702 29-33. doi:10.1016/j.nima.2012.07.059
Jorge Cardoso, M., Leung, K., Modat, M., Keihaninejad, S., Cash, D., Barnes, J., ...Alzheimer’s Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2013). STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation.. Medical Image Analysis, 17 (6), 671-684. doi:10.1016/j.media.2013.02.006
Keihaninejad, S., Zhang, H., Ryan, N.S., Malone, I.B., Modat, M., Cardoso, J., ...Ourselin, S. (2013). An unbiased longitudinal analysis framework for tracking white matter changes using diffusion tensor imaging with application to Alzheimer's disease. NeuroImage, 72 153-163. doi:10.1016/j.neuroimage.2013.01.044
Leung, K.K., Bartlett, J.W., Barnes, J., Manning, E.N., Ourselin, S., Fox, N.C., Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2013). Cerebral atrophy in mild cognitive impairment and Alzheimer disease: rates and acceleration.. Neurology, 80 (7), 648-654. doi:10.1212/WNL.0b013e318281ccd3
Liu, L., Shi, W., Rueckert, D., Hu, M., Ourselin, S., Zhuang, X. (2013). Model-Guided Directional Minimal Path for Fully Automatic Extraction of Coronary Centerlines from Cardiac CTA..
Macdonald, K.E., Bartlett, J.W., Leung, K.K., Ourselin, S., Barnes, J. (2013). The Value of Hippocampal and Temporal Horn Volumes and Rates of Change in Predicting Future Conversion to AD. Alzheimer Disease and Associated Disorders, 27 (2), 168-173. doi:10.1097/WAD.0b013e318260a79a
Mahoney, C.J., Malone, I.B., Ridgway, G.R., Buckley, A.H., Downey, L.E., Golden, H.L., ...Rossor, M.N. (2013). White matter tract signatures of the progressive aphasias.. Neurobiology of Aging, 34 (6), 1687-1699. doi:10.1016/j.neurobiolaging.2012.12.002
Malone, I.B., Cash, D., Ridgway, G.R., MacManus, D.G., Ourselin, S., Fox, N.C., Schott, J.M. (2013). MIRIAD--Public release of a multiple time point Alzheimer's MR imaging dataset.. NeuroImage, 70 33-36. doi:10.1016/j.neuroimage.2012.12.044
Melbourne, A., Eaton-Rosen, Z., Bainbridge, A., Kendall, G.S., Cardoso, M.J., Robertson, N.J., ...Ourselin, S. (2013). Measurement of Myelin in the Preterm Brain: Multi-compartment Diffusion Imaging and Multi-component T2 Relaxometry..
Muhlert, N., Sethi, V., Schneider, T., Daga, P., Cipolotti, L., Haroon, H.A., ...Miller, D.H. (2013). Diffusion MRI-based cortical complexity alterations associated with executive function in multiple sclerosis.. Journal of Magnetic Resonance Imaging, 38 (1), 54-63. doi:10.1002/jmri.23970
Norris, F.C., Modat, M., Cleary, J.O., Price, A.N., McCue, K., Scambler, P.J., ...Lythgoe, M.F. (2013). Segmentation propagation using a 3D embryo atlas for high-throughput MRI phenotyping: comparison and validation with manual segmentation.. Magnetic Resonance in Medicine, 69 (3), 877-883. doi:10.1002/mrm.24306
Ourselin, S., Rueckert, D., Smith, N. (2013). Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics): Preface. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7945 LNCS
Petersen, J., Modat, M., Cardoso, M.J., Dirksen, A., Ourselin, S., Bruijne, M.D. (2013). Quantitative Airway Analysis in Longitudinal Studies Using Groupwise Registration and 4D Optimal Surfaces..
Petersen, J., Modat, M., Cardoso, M.J., Dirksen, A., Ourselin, S., de Bruijne, M. (2013). Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces.. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention, 16 (Pt 2), 287-294.
Rodionov, R., Vollmar, C., Nowell, M., Miserocchi, A., Wehner, T., Micallef, C., ...McEvoy, A.W. (2013). Feasibility of multimodal 3D neuroimaging to guide implantation of intracranial EEG electrodes.. Epilepsy Research, 107 (1-2), 91-100. doi:10.1016/j.eplepsyres.2013.08.002
Roth, H., McClelland, J., Hampshire, T., Boone, D., Hu, Y., Modat, M., ...Hawkes, D.J. (2013). Registration of Prone and Supine CT Colonography Datasets with Differing Endoluminal Distension.. In (pp. 29-38). .
Roth, H.R., McClelland, J.R., Modat, M., Hampshire, T.E., Boone, D.J., Helbren, E., ...Halligan, S. (2013). CT colonography: inverse-consistent symmetric registration of prone and supine inner colon surfaces.
Ryan, N.S., Keihaninejad, S., Shakespeare, T.J., Lehmann, M., Crutch, S.J., Malone, I.B., ...Yousry, T. (2013). Magnetic resonance imaging evidence for presymptomatic change in thalamus and caudate in familial Alzheimer's disease.. Brain, 136 (5), 1399-1414. doi:10.1093/brain/awt065
Scahill, R.I., Ridgway, G.R., Barnes, J., Ryan, N.S., Clarkson, M.J., Foster, J., ...Warren, J.D. (2013). Genetic influences on atrophy patterns in familial AD: a comparason of APP and PSEN-1 mutations. Journal of Alzheimer's Disease, 35 (1), 199-212. doi:10.3233/JAD-121255
Simonyan, K., Modat, M., Ourselin, S., Cash, D., Criminisi, A., Zisserman, A. (2013). Immediate ROI search for 3-D medical images. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7723 LNCS 56-67. doi:10.1007/978-3-642-36678-9_6
Simpson, I.J.A., Woolrich, M.W., Cardoso, M.J., Cash, D.M., Modat, M., Schnabel, J.A., Ourselin, S. (2013). A Bayesian Approach for Spatially Adaptive Regularisation in Non-rigid Registration..
Tobon-Gomez, C., De Craene, M., McLeod, K., Tautz, L., Shi, W., Hennemuth, A., ...Kapetanakis, S. (2013). Benchmarking framework for myocardial tracking and deformation algorithms: an open access database.. Medical Image Analysis, 17 (6), 632-648. doi:10.1016/j.media.2013.03.008
Wang, H., Shi, W., Zhuang, X., Wu, X., Tung, K.P., Ourselin, S., ...Rueckert, D. (2013). Landmark detection and coupled patch registration for cardiac motion tracking. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 8669 doi:10.1117/12.2006782
Winston, G.P., Cardoso, M.J., Williams, E.J., Burdett, J.L., Bartlett, P.A., Espak, M., ...Ourselin, S. (2013). Online automated hippocampal segmentation in patients with epilepsy.
Winston, G.P., Cardoso, M.J., Williams, E.J., Burdett, J.L., Bartlett, P.A., Espak, M., ...Ourselin, S. (2013). Automated hippocampal segmentation in patients with epilepsy: available free online.. Epilepsia, 54 (12), 2166-2173. doi:10.1111/epi.12408
Xi, J., Lamata, P., Niederer, S., Land, S., Shi, W., Zhuang, X., ...Rinaldi, C.A. (2013). The estimation of patient-specific cardiac diastolic functions from clinical measurements.. Medical Image Analysis, 17 (2), 133-146. doi:10.1016/j.media.2012.08.001
Young, J., Ashburner, J., Ourselin, S., I.E.E.E. (2013). Wrapper methods to correct mislabelled training data.
Young, J., Modat, M., Cardoso, M.J., Mendelson, A., Cash, D., Ourselin, S. (2013). Accurate multimodal probabilistic prediction of conversion to Alzheimer's disease in patients with mild cognitive impairment. NeuroImage: Clinical, 2 (1), 735-745. doi:10.1016/j.nicl.2013.05.004
Zhuang, X., Shi, W., Wang, H., Rueckert, D., Ourselin, S. (2013). Computation on shape manifold for atlas generation: Application to whole heart segmentation of cardiac MRI. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 8669 doi:10.1117/12.2007181
Zhuang, X., Song, J., Zhan, S., Lan, T., Huang, H., Hu, M., ...Li, Q. (2013). A registration and atlas propagation based framework for automatic whole heart segmentation of CT volumes. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 8669 doi:10.1117/12.2007454
Zuluaga, M.A., Cardoso, M.J., Modat, M., Ourselin, S. (2013). Multi-atlas propagation whole heart segmentation from MRI and CTA using a local normalised correlation coefficient criterion.

2012

Allain, B., Hu, M., Lovat, L.B., Cook, R.J., Vercauteren, T., Ourselin, S., Hawkes, D.J. (2012). Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty.. Medical Image Analysis, 16 (2), 482-496. doi:10.1016/j.media.2011.11.005
Alner, K., Hyare, H., Mead, S., Rudge, P., Wroe, S., Rohrer, J.D., ...Hunt, H. (2012). Distinct neuropsychological profiles correspond to distribution of cortical thinning in inherited prion disease caused by insertional mutation.. Journal of Neurology, Neurosurgery and Psychiatry, 83 (1), 109-114. doi:10.1136/jnnp-2011-300167
Bousse, A., Panagiotou, C., Erlandsson, K., Ourselin, S., Arridge, S., Hutton, B.F. (2012). Monotonic Algorithm for Joint Entropy-Based Anatomical Priors in Parametric PET Image Reconstruction.
Bousse, A., Pedemonte, S., Thomas, B.A., Erlandsson, K., Ourselin, S., Arridge, S., Hutton, B.F. (2012). Markov random field and Gaussian mixture for segmented MRI-based partial volume correction in PET.. Physics in Medicine and Biology, 57 (20), 6681-6705. doi:10.1088/0031-9155/57/20/6681
Cardoso, M.J., Modat, M., Ourselin, S., Keihaninejad, S., Cash, D. (2012). Multi-STEPS: Multi-label similarity and truth estimation for propagated segmentations. Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis, 153-158. doi:10.1109/MMBIA.2012.6164748
Cardoso, M.J., Winston, G., Modat, M., Keihaninejad, S., Duncan, J., Ourselin, S. (2012). Geodesic shape-based averaging..
Cardoso, M.J., Wolz, R., Modat, M., Fox, N.C., Rueckert, D., Ourselin, S. (2012). Geodesic information flows..
Cash, D.M., Melbourne, A., Modat, M., Machado, M., Clarkson, M., Fox, N., Ourselin, S. (2012). Cortical Folding Analysis on Patients with Alzheimer’s Disease and Mild Cognitive Impairment.
Cheng, M., Marinovic, W., Watson, M., Ourselin, S., Passenger, J., De Visser, H., ...Riek, S. (2012). Abdominal Palpation Haptic Device for Colonoscopy Simulation Using Pneumatic Control. IEEE Transactions on Haptics, 5 (2), 97-108. doi:10.1109/TOH.2011.66
Daga, P., Winston, G., Modat, M., White, M., Mancini, L., Cardoso, M., ...Ourselin, S. (2012). Accurate localisation of optic radiation during neurosurgery in an interventional MRI Suite. IEEE Transactions on Medical Imaging, 31 (4), 882-891. doi:10.1109/TMI.2011.2179668
Fonteijn, H.M., Modat, M., Clarkson, M.J., Barnes, J., Lehmann, M., Hobbs, N.Z., ...Fox, N.C. (2012). An event-based model for disease progression and its application in familial Alzheimer's disease and Huntington's disease.. NeuroImage, 60 (3), 1880-1889. doi:10.1016/j.neuroimage.2012.01.062
Fuin, N., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B.F. (2012). Subsampled Fisher Information Matrix for efficient estimation of the uncertainty in emission tomography. IEEE Nuclear Science Symposium Conference Record, 2251-2256. doi:10.1109/NSSMIC.2012.6551512
Fuin, N., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B.F. (2012). Use of the Fisher Information Matrix to optimize the acquisition protocol for a D-SPECT system. IEEE Nuclear Science Symposium Conference Record, 2137-2142. doi:10.1109/NSSMIC.2012.6551489
Han, L., Hipwell, J.H., Tanner, C., Taylor, Z., Mertzanidou, T., Cardoso, J., ...Hawkes, D.J. (2012). Development of patient-specific biomechanical models for predicting large breast deformation.. Physics in Medicine and Biology, 57 (2), 455-472. doi:10.1088/0031-9155/57/2/455
Hoang Duc, A.K., Modat, M., Leung, K.K., Barnes, J., Fox, N.C., Kadir, T., Ourselin, S. (2012). Manifold learning for atlas selection in multiatlas based segmentation of hippocampus.
Johnsen, S.F., Taylor, Z.A., Clarkson, M.J., Thompson, S., Hu, M., Gurusamy, K., ...Ourselin, S. (2012). Explicit contact modeling for surgical computer guidance and simulation.
Kazantsev, D., Arridge, S.R., Pedemonte, S., Bousse, A., Erlandsson, K., Hutton, B.F., Ourselin, S. (2012). An anatomically driven anisotropic diffusion filtering method for 3D SPECT reconstruction.. Physics in Medicine and Biology, 57 (12), 3793-3810. doi:10.1088/0031-9155/57/12/3793
Keihaninejad, S., Ryan, N., Malone, I.B., Modat, M., Cash, D.M., Ridgway, G., ...Ourselin, S. (2012). The importance of group-wise registration in Tract Based Spatial Statistics study of neurodegeneration: A simulation study in Alzheimer’s disease. PloS one, 7 (11),
Leung, K.K., Ridgway, G.R., Ourselin, S., Fox, N.C. (2012). Consistent multi-time-point brain atrophy estimation from the boundary shift integral. NeuroImage, 59 (4), 3995-4005. doi:10.1016/j.neuroimage.2011.10.068
Ma, D., Cardoso, M., Modat, M., Powell, N., Holmes, H., Lythgoe, M., Ourselin, S. (2012). Multi Atlas Segmentation applied to in vivo mouse brain MRI.
Martin, J., McClelland, J., Thomas, C., Wildermuth, K., Landau, D., Ourselin, S., Hawkes, D. (2012). Motion modelling and motion compensated reconstruction of tumours in cone-beam computed tomography. Proceedings of the Workshop on Mathematical Methods in Biomedical Image Analysis, 281-286. doi:10.1109/MMBIA.2012.6164764
Melbourne, A., Cahill, N., Tanner, C., Modat, M., Hawkes, D.J., Ourselin, S. (2012). Using fractional gradient information in non-rigid image registration: Application to breast MRI. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 8314 doi:10.1117/12.911173
Melbourne, A., Kendall, G.S., Cardoso, M.J., Gunney, R., Robertson, N.J., Marlow, N., Ourselin, S. (2012). Radial structure in the preterm cortex; persistence of the preterm phenotype at term equivalent age?.
Mertzanidou, T., Hipwell, J., Cardoso, M.J., Zhang, X., Tanner, C., Ourselin, S., ...Hawkes, D. (2012). MRI to X-ray mammography registration using a volume-preserving affine transformation.. Medical Image Analysis, 16 (5), 966-975. doi:10.1016/j.media.2012.03.001
Modat, M., Cardoso, M.J., Cash, D.M., Leung, K.K., Clarkson, M.J., Barnes, J., ...Ourselin, S. (2012). A Pipeline for efficient segmentation using a large template library..
Modat, M., Cardoso, M.J., Daga, P., Cash, D.M., Fox, N.C., Ourselin, S. (2012). Inverse-Consistent Symmetric Free Form Deformation..
Modat, M., Daga, P., Cardoso, M.J., Ourselin, S., Ridgway, G.R., Ashburner, J. (2012). Parametric non-rigid registration using a stationary velocity field.
Pedemonte, S., Arridge, S., Hutton, B.F., Ourselin, S. (2012). Joint Estimation of the Activity and the Events of Interaction in SPECT Systems.
Pedemonte, S., Cardoso, M.J., Arridge, S.R., Hutton, B.F., Ourselin, S. (2012). Steady-State Model of the Radio-Pharmaceutical Uptake for MR-PET..
Rohrer, J.D., Clarkson, M.J., Kittus, R., Rossor, M.N., Ourselin, S., Warren, J.D., Fox, N.C. (2012). Rates of hemispheric and lobar atrophy in the language variants of frontotemporal lobar degeneration.. Journal of Alzheimer's Disease, 30 (2), 407-411. doi:10.3233/JAD-2012-111556
Roth, H., McClelland, J., Modat, M., Hampshire, T., Boone, D., Hu, M., ...Hawkes, D. (2012). Inverse-Consistent Symmetric Registration of Inner Colon Surfaces Derived From Prone and Supine CT Colonography.
Samson, R., Cardoso, M., Muhlert, N., Sethi, V., Wheeler-Kingshott, C., Ourselin, S., ...Chard, D. (2012). MTR analysis of inner and outer cortical bands in multiple sclerosis.
Shi, W., Zhuang, X., Wang, H., Duckett, S., Luong, D.V., Tobon-Gomez, C., ...Razavi, R.S. (2012). A comprehensive cardiac motion estimation framework using both untagged and 3-D tagged MR images based on nonrigid registration.. IEEE Transactions on Medical Imaging, 31 (6), 1263-1275. doi:10.1109/TMI.2012.2188104
Shi, W., Zhuang, X., Wolz, R., Duckett, S.G., Tung, K.-.P., Wang, H., ...Rueckert, D. (2012). A Multi-image Graph Cut Approach for Cardiac Image Segmentation and Uncertainty Estimation..
Thomas, B.A., Erlandsson, K., Reilhac, A., Bousse, A., Kazantsev, D., Pedemonte, S., ...Hutton, B.F. (2012). A Comparison of the Options for Brain Partial Volume Correction Using PET/MRI.
Vonach, M., Marson, B., Yun, M., Cardoso, J., Modat, M., Ourselin, S., Holder, D. (2012). A method for rapid production of subject specific finite element meshes for electrical impedance tomography of the human head.. Physiological Measurement, 33 (5), 801-816. doi:10.1088/0967-3334/33/5/801
Vunckx, K., Arridge, S.R., Bousse, A., Kazantsev, D., Pedemonte, S., Ourselin, S., Hutton, B.F. (2012). Unifying global and local statistical measures for anatomy-guided emission tomography reconstruction. IEEE Nuclear Science Symposium Conference Record, 2161-2165. doi:10.1109/NSSMIC.2012.6551494
Wang, H., Shi, W., Zhuang, X., Duckett, S.G., Tung, K.-.P., Edwards, P.J., ...Rueckert, D. (2012). Automatic Cardiac Motion Tracking Using Both Untagged and 3D Tagged MR Images..
Winston, G.P., Daga, P., Stretton, J., Modat, M., Symms, M.R., McEvoy, A.W., ...Duncan, J.S. (2012). Optic radiation tractography and vision in anterior temporal lobe resection. Annals of Neurology, 71 (3), 334-341. doi:10.1002/ana.22619
Young, J., Modat, M., Cardoso, M.J., Ashburner, J., Ourselin, S. (2012). Classification of Alzheimer's disease patients and controls with Gaussian processes..
Young, J., Ridgway, G.R., Leung, K.K., Ourselin, S. (2012). Classification of Alzheimer's disease patients with hippocampal shape, wrapper based feature selection and support vector machine.
Zuluaga, M.A., Cardoso, M.J., Ourselin, S. (2012). Automatic right ventricle segmentation using multi-label fusion in cardiac MRI.

2011

Cardoso, M.J., Clarkson, M.J., Modat, M., Ourselin, S. (2011). On the extraction of topologically correct thickness measurements using Khalimsky's cubic complex.
Cardoso, M.J., Clarkson, M.J., Modat, M., Ourselin, S. (2011). NiftySeg.
Cardoso, M.J., Clarkson, M.J., Modat, M., Ourselin, S. (2011). Longitudinal cortical thickness estimation using Khalimsky's cubic complex..
Cardoso, M.J., Clarkson, M.J., Modat, M., Talbot, H., Couprie, M., Ourselin, S. (2011). Topologically correct cortical segmentation using Khalimsky's cubic complex framework.
Cardoso, M.J., Clarkson, M.J., Ridgway, G.R., Modat, M., Fox, N.C., Ourselin, S., Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2011). LoAd: a locally adaptive cortical segmentation algorithm.. NEUROIMAGE, 56 (3), 1386-1397. doi:10.1016/j.neuroimage.2011.02.013
Cardoso, M.J., Melbourne, A., Kendall, G.S., Hagmann, C., Bainbridge, A., Marlow, N., ...Ourselin, S. (2011). ADAPTIVE NEONATAL BRAIN SEGMENTATION: APPLICATION TO VENTRICULOMEGALY AND EXCESS EXTRA-AXIAL CEREBRAL-SPINAL FLUID. PEDIATRIC RESEARCH, 70 30. doi:10.1038/pr.2011.255
Cardoso, M.J., Melbourne, A., Kendall, G.S., Modat, M., Hagmann, C.F., Robertson, N.J., ...Ourselin, S. (2011). Adaptive neonate brain segmentation..
Clarkson, M.J., Cardoso, M.J., Modat, M., Ridgway, G.R., Leung, K.K., Rohrer, J.D., ...Fox, N. (2011). A Comparative Study of Voxel and Surface Based Cortical Thickness Methods in Frontotemporal Dementia.
Clarkson, M.J., Cardoso, M.J., Ridgway, G.R., Modat, M., Leung, K.K., Rohrer, J.D., ...Ourselin, S. (2011). A comparison of voxel and surface based cortical thickness estimation methods. NEUROIMAGE, 57 (3), 856-865. doi:10.1016/j.neuroimage.2011.05.053
Clarkson, M.J., Cardoso, M., Modat, M., Ridgway, G.R., Leung, K.K., Rohrer, J., ...Ourselin, S. (2011). Cross-sectional analysis using voxel or surface based cortical thickness methods: a comparison study.
Clarkson, M.J., Modat, M., Han, L., Ourselin, S., Hawkes, D.J., Alexander, D.C., ...Barrat, D. (2011). The UCL Centre for Medical Image Computing (CMIC): An integrated suite of open source software tools to support imaging research in Neurosciences, Oncology and Cardiovascular Sciences.
Cleary, J.O., Modat, M., Norris, F.C., Price, A.N., Jayakody, S.A., Martinez-Barbera, J.P., ...Scambler, P.J. (2011). Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping.. NEUROIMAGE, 54 (2), 769-778. doi:10.1016/j.neuroimage.2010.07.039
Daga, P. (2011). Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients.
Daga, P., Winston, G., Modat, M., Cardoso, M.J., White, M., Mancini, L., ...Yousry, T. (2011). Improved neuronavigation through integration of intraoperative anatomical and diffusion images in an interventional MRI suite.
Fonteijn, H.M., Clarkson, M.J., Modat, M., Barnes, J., Lehmann, M., Ourselin, S., ...Alexander, D.C. (2011). An event-based disease progression model and its application to familial Alzheimer's disease.
Han, L., HIPWELL, J., Mertzanidou, T., Carter, T., Modat, M., Ourselin, S., Hawkes, D. (2011). A HYBRID FEM-BASED METHOD FOR ALIGNING PRONE AND SUPINE IMAGES FOR IMAGE GUIDED BREAST SURGERY.
Kazantsev, D., Bousse, A., Pedemonte, S., Arridge, S.R., Hutton, B.F., Ourselin, S. (2011). Edge preserving bowsher prior with nonlocal weighting for 3D spect reconstruction. Proceedings - International Symposium on Biomedical Imaging, 1158-1161. doi:10.1109/ISBI.2011.5872607
Lehmann, M., Rohrer, J.D., Clarkson, M.J., Ridgway, G.R., Scahill, R.I., Modat, M., ...Rossor, M.N. (2011). Patterns of cortical thickness in pathologically-confirmed typical and atypical Alzheimer's disease. In (pp. 57-67). .
Leung, K.K., Barnes, J., Modat, M., Ridgway, G.R., Bartlett, J., Fox, N.C., Ourselin, S. (2011). Automated brain extraction using multi-atlas propagation and segmentation (MAPS).
Leung, K.K., Barnes, J., Modat, M., Ridgway, G.R., Bartlett, J.W., Fox, N.C., ...Alzheimer's Disease Neuroimaging, I.n.i.t.i.a.t.i.v.e. (2011). Brain MAPS: an automated, accurate and robust brain extraction technique using a template library.. NEUROIMAGE, 55 (3), 1091-1108. doi:10.1016/j.neuroimage.2010.12.067
Leung, K.K., Ridgway, G.R., Clarkson, M.J., Nielsen, C., Ourselin, S., Fox, N. (2011). Automated and consistent brain atrophy estimation using boundary shift integral in longitudinal MRI study.
Leung, K.K., Ridgway, G.R., Ourselin, S., Fox, N.C. (2011). Consistent multi-time-point brain atrophy estimation from the boundary shift integral.. Neuroimage,
McClelland, J.R., Hughes, S., Modat, M., Qureshi, A., Ahmad, S., Landau, D.B., ...Hawkes, D.J. (2011). Inter-fraction variations in respiratory motion models.. PHYS MED BIOL, 56 (1), 251-272. doi:10.1088/0031-9155/56/1/015
Melbourne, A., Hipwell, J., Modat, M., Mertzanidou, T., Huisman, H., Ourselin, S., Hawkes, D.J. (2011). The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI.. Physics in Medicine and Biology, 56 (24), 7693-7708. doi:10.1088/0031-9155/56/24/001
Melbourne, A., Kendall, G.S., Cardoso, M.J., San, P., Hagman, C., Bainbridge, A., ...Robertson, N.J. (2011). AUTOMATED ANALYSIS OF THE PRETERM NEONATAL CORTEX AT TERM EQUIVALENT AGE AND CORRELATION WITH COGNITIVE OUTCOME AT 1 YEAR CORRECTED AGE. PEDIATRIC RESEARCH, 70 193. doi:10.1038/pr.2011.418
Modat, M., Ridgway, G.R., Daga, P., Cardoso, M.J., Hawkes, D.J., Ashburner, J., Ourselin, S. (2011). Log-Euclidean free-form deformation.
Murphy, K., Van Ginneken, B., Reinhardt, J., Kabus, S., Ding, K., Deng, X., ...Garcia, V. (2011). Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge.. IEEE T MED IMAGING, 30 (11), 1901-1920. doi:10.1109/TMI.2011.2158349
Norris, F.C., Cleary, J.O., Modat, M., Sinclair, B., Mccue, K., Wells, J.A., ...Scambler, P.J. (2011). Mouse phenotyping using high resolution 3D microscopic magnetic resonance imaging.
Pedemonte, S., Bousse, A., Hutton, B.F., Arridge, S., Ourselin, S. (2011). 4-D Generative Model for PET/MRI Reconstruction.
Pedemonte, S., Bousse, A., Hutton, B.F., Arridge, S., Ourselin, S. (2011). Probabilistic graphical model of SPECT/MRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 7009 LNCS 167-174. doi:10.1007/978-3-642-24319-6_21
Ridgway, G.R., Lehmann, M., Rohrer, J., Clarkson, M., Warren, J., Ourselin, S., Fox, N. (2011). Balanced sensitivity and specificity on unbalanced data using support vector machine re-thresholding.
Rohrer, J.D., Lashley, T., Schott, J.M., Warren, J.E., Mead, S., Isaacs, A.M., ...Warrington, E. (2011). Clinical and neuroanatomical signatures of tissue pathology in frontotemporal lobar degeneration. BRAIN, 134 2565-2581. doi:10.1093/brain/awr198
Roth, H.R., McClelland, J.R., Boone, D.J., Modat, M., Cardoso, M.J., Hampshire, T.E., ...Slabaugh, G.G. (2011). Registration of the endoluminal surfaces of the colon derived from prone and supine CT colonography. MED PHYS, 38 (6), 3077-3089. doi:10.1118/1.3577603
Shi, W., Zhuang, X., Wang, H., Duckett, S.G., O'Regan, D.P., Edwards, P.J., ...Rueckert, D. (2011). Automatic Segmentation of Different Pathologies from Cardiac Cine MRI Using Registration and Multiple Component EM Estimation..
SIOW, B., Cleary, J.O., Greene, N.D., Daga, P., Modat, M., Ordidge, R., ...Lythgoe, M.F. (2011). Mouse Embryo Phenotyping with Contrast-enhanced micro-Diffusion Tensor Imaging.
Taylor, Z.A., Crozier, S., Ourselin, S. (2011). A reduced order explicit dynamic finite element algorithm for surgical simulation.. IEEE T MED IMAGING, 30 (9), 1713-1721. doi:10.1109/TMI.2011.2143723
Thomas, B.A., Erlandsson, K., Modat, M., Thurfjell, L., Vandenberghe, R., Ourselin, S., Hutton, B.F. (2011). The importance of appropriate partial volume correction for PET quantification in Alzheimer's disease.. EUR J NUCL MED MOL I, 38 (6), 1104-1119. doi:10.1007/s00259-011-1745-9
Thomas, B.A., Erlandsson, K., Thurfjell, L., Ourselin, S., Hutton, B.F. (2011). An improved iterative MR-based partial volume correction technique for brain PET quantification.
Thomas, B.A., Erlandsson, K., Thurfjell, L., Vandenberghe, R., Ourselin, S., Hutton, B.F. (2011). White matter variability for two amyloid brain PET tracers: implications for partial volume correction.
Winston, G.P., Daga, P., Stretton, J., Modat, M., Symms, M.R., McEvoy, A.W., ...Duncan, J.S. (2011). Developing optic radiation tractography to reduce visual field deficits following anterior temporal lobe resection.
Zhang, D.P., Zhuang, X.H., Ourselin, S., Rueckert, D. (2011). Motion tracking of left ventricle and coronaries in 4D CTA.
Zhuang, X., Arridge, S., Hawkes, D.J., Ourselin, S. (2011). A nonrigid registration framework using spatially encoded mutual information and free-form deformations.. IEEE T MED IMAGING, 30 (10), 1819-1828. doi:10.1109/TMI.2011.2150240
Zhuang, X., Shi, W., Duckett, S.G., Wang, H., Razavi, R., Hawkes, D.J., ...Ourselin, S. (2011). A Framework Combining Multi-sequence MRI for Fully Automated Quantitative Analysis of Cardiac Global And Regional Functions..

2010

Allain, B., Hu, M., Lovat, L.B., Cook, R.J., Vercauteren, T., Ourselin, S., Hawkes, D.J. (2010). A system for biopsy site re-targeting with uncertainty in gastroenterology and oropharyngeal examinations..
Archer, H.A., Kennedy, J., Barnes, J., Pepple, T., Boyes, R., Randlesome, K., ...Frost, C. (2010). Memory complaints and increased rates of brain atrophy: risk factors for mild cognitive impairment and Alzheimer's disease. INT J GERIATR PSYCH, 25 (11), 1119-1126. doi:10.1002/gps.2440
Barnes, J., Ridgway, G.R., Bartlett, J., Henley, S.M., Lehmann, M., Hobbs, N., ...Fox, N.C. (2010). Head size, age and gender adjustment in MRI studies: a necessary nuisance?. NEUROIMAGE, 53 (4), 1244-1255. doi:10.1016/j.neuroimage.2010.06.025
Bourgeat, P., Chételat, G., Villemagne, V.L., Fripp, J., R.a.n.i.g.a., P., ......O. (2010). Beta-amyloid burden in the temporal neocortex is related to hippocampal atrophy in elderly subjects without dementia.. NEUROLOGY, 74 (2), 121-127. doi:10.1212/WNL.0b013e3181c918b5
Bousse, A., Erlandsson, K., Pedemonte, S., Kazantsev, D., Ourselin, S., Arridge, S., Hutton, B.F. (2010). Weighted MRI-Based bowsher priors for SPECT brain image reconstruction. IEEE Nuclear Science Symposium Conference Record, 3519-3522. doi:10.1109/NSSMIC.2010.5874462
Bousse, A., Fuin, N., Erlandsson, K., Pedemonte, S., Kazantsev, D., Ourselin, S., ...Hutton, B.F. (2010). Point spread function optimization in SPECT. IEEE Nuclear Science Symposium Conference Record, 2061-2065. doi:10.1109/NSSMIC.2010.5874139
Cardoso, M.J., Clarkson, M.J., Modat, M., Ridgway, G.R., Ourselin, S. (2010). Locally weighted Markov random fields for cortical segmentation.
Clarkson, M.J., Malone, I.B., Modat, M., Leung, K.K., Ryan, N., Alexander, D.C., ...Ourselin, S. (2010). A Framework for Using Diffusion Weighted Imaging to Improve Cortical Parcellation.
Dowling, J., Lambert, J., Parker, J., Greer, P.B., Fripp, J., Denham, J., ...Salvado, O. (2010). Automatic MRI Atlas-Based External Beam Radiation Therapy Treatment Planning for Prostate Cancer..
Evans, M.C., Barnes, J., Nielsen, C., Kim, L.G., Clegg, S.L., Blair, M., ...Ourselin, S. (2010). Volume changes in Alzheimer's disease and mild cognitive impairment: cognitive associations. EUR RADIOL, 20 (3), 674-682. doi:10.1007/s00330-009-1581-5
Fripp, J., Crozier, S., Warfield, S.K., Ourselin, S. (2010). Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee. IEEE T MED IMAGING, 29 (1), 55-64. doi:10.1109/TMI.2009.2024743
Fuin, N., Bousse, A., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B. (2010). Collimator design in SPECT, an optimisation tool. IEEE Nuclear Science Symposium Conference Record, 3149-3154. doi:10.1109/NSSMIC.2010.5874382
Guitera, P., Bourgeat, P., Stretch, J.R., Scolyer, R.A., Ourselin, S., Lean, C., ...Bourne, R. (2010). Diagnostic value of 8.5 T magnetic resonance spectroscopy of benign and malignant skin lesion biopsies.. MELANOMA RES, 20 (4), 311-317. doi:10.1097/CMR.0b013e32833bd0ec
Han, L., Hipwell, J.H., Taylor, Z.A., Tanner, C., Ourselin, S., Hawkes, D.J. (2010). Fast Deformation Simulation of Breasts Using GPU-Based Dynamic Explicit Finite Element Method..
Kazantsev, D., Pedemonte, S., Bousse, A., Panagiotou, C., Arridge, S.R., Hutton, B.F., Ourselin, S. (2010). ET Bayesian reconstruction using automatic bandwidth selection for joint entropy optimization. IEEE Nuclear Science Symposium Conference Record, 3301-3307. doi:10.1109/NSSMIC.2010.5874415
Lee, B., Popescu, D.C., Ourselin, S. (2010). Topology modification for surgical simulation using precomputed finite element models based on linear elasticity.. PROG BIOPHYS MOL BIO, 103 (2-3), 236-251. doi:10.1016/j.pbiomolbio.2010.09.011
Lehmann, M., Douiri, A., Kim, L.G., Modat, M., Chan, D., Ourselin, S., ...Fox, N.C. (2010). Atrophy patterns in Alzheimer's disease and semantic dementia: a comparison of FreeSurfer and manual volumetric measurements.. NEUROIMAGE, 49 (3), 2264-2274. doi:10.1016/j.neuroimage.2009.10.056
Lehmann, M., Rohrer, J.D., Clarkson, M.J., Ridgway, G.R., Scahill, R.I., Modat, M., ...Rossor, M.N. (2010). Reduced Cortical Thickness in the Posterior Cingulate Gyrus is Characteristic of Both Typical and Atypical Alzheimer's Disease. J ALZHEIMERS DIS, 20 (2), 587-598. doi:10.3233/JAD-2010-1401
Leung, K.K., Barnes, J., Ridgway, G.R., Bartlett, J.W., Clarkson, M.J., Macdonald, K., ...Ourselin, S. (2010). Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease. NEUROIMAGE, 51 (4), 1345-1359. doi:10.1016/j.neuroimage.2010.03.018
Leung, K.K., Clarkson, M.J., Bartlett, J.W., Clegg, S., Jack, C.R., Weiner, M.W., ...the, A.D.N.I. (2010). Robust atrophy rate measurement in Alzheimer's disease using multi-site serial MRI: Tissue-specific intensity normalization and parameter selection. NEUROIMAGE, 50 (2), 516-523. doi:10.1016/j.neuroimage.2009.12.059
Leung, K.K., Shen, K.-.K., Barnes, J., Ridgway, G.R., Clarkson, M.J., Fripp, J., ...Bourgeat, P. (2010). Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer’s Disease Using Hippocampal Atrophy Rate and Statistical Shape Models.
Mertzanidou, T., Hipwell, J.H., Cardoso, M.J., Tanner, C., Ourselin, S., Hawkes, D.J. (2010). X-ray Mammography - MRI Registration Using a Volume-Preserving Affine Transformation and an EM-MRF for Breast Tissue Classification..
Modat, M., Daga, P., Clarkson, M.J., Ourselin, S. (2010). NiftyReg.
Modat, M., Ridgway, G.R., Hawkes, D.J., Fox, N.C., Ourselin, S. (2010). Nonrigid registration with differential bias correction using normalised mutual information.
Modat, M., Ridgway, G.R., Taylor, Z.A., Lehmann, M., Barnes, J., Hawkes, D.J., ...Ourselin, S. (2010). Fast free-form deformation using graphics processing units.. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 98 (3), 278-284. doi:10.1016/j.cmpb.2009.09.002
Modat, M., Taylor, Z., Ridgway, G., Barnes, J., Wild, E., Hawkes, D.J., ...Ourselin, S. (2010). Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington’s Disease Data.
Modat, M., Vercauteren, T., Ridgway, G.R., Hawkes, D.J., Fox, N.C., Ourselin, S. (2010). Diffeomorphic demons using normalized mutual information, evaluation on multimodal brain MR images.
Norris, F.C., Cleary, J.O., Modat, M., Price, A.N., McCue, K., Beddow, S., ...Lythgoe, M.F. (2010). Propagation-Based Morphometry in an Ex Vivo Mouse Embryo Atlas - Assessment and Validation.
Pedemonte, S., Bousse, A., Erlandsson, K., Modat, M., Arridge, S., Hutton, B.F., Ourselin, S. (2010). GPU accelerated rotation-based emission tomography reconstruction. IEEE Nuclear Science Symposium Conference Record, 2657-2661. doi:10.1109/NSSMIC.2010.5874272
Pedemonte, S., Cardoso, M.J., Bousse, A., Panagiotou, C., Kazantsev, D., Arridge, S., ...Ourselin, S. (2010). Class Conditional Entropic Prior for MRI Enhanced SPECT Reconstruction.
Pedemonte, S., Ourselin, S. (2010). NiftyRec.
Rohrer, J.D., Ridgway, G.R., Crutch, S.J., Hailstone, J., Goll, J.C., Clarkson, M.J., ...Ourselin, S. (2010). Progressive logopenic/phonological aphasia: erosion of the language network.. NEUROIMAGE, 49 (1), 984-993. doi:10.1016/j.neuroimage.2009.08.002
Rohrer, J.D., Ridgway, G.R., Modat, M., Ourselin, S., Mead, S., Fox, N.C., ...Warren, J.D. (2010). Distinct profiles of brain atrophy in frontotemporal lobar degeneration caused by progranulin and tau mutations.. NEUROIMAGE, 53 (3), 1070-1076. doi:10.1016/j.neuroimage.2009.12.088
Roth, H., McClelland, J., Boone, D., Hu, M., Ourselin, S., Slabaugh, G., ...Medicsight, P.L.C. (2010). Conformal Mapping of the Inner Colon Surface to a Cylinder for the Application of Prone to Supine Registration.
Roth, H., McClelland, J., Modat, M., Boone, D., Hu, M., Ourselin, S., ...Hawkes, D. (2010). Establishing spatial correspondence between the inner colon surfaces from prone and supine CT colonography..
Ryan, N.S., Malone, I., Lehmann, M., Crutch, S., Ourselin, S., Ciccarelli, O., Fox, N.C. (2010). Patterns of white matter tract degeneration and grey matter loss in posterior cortical atrophy and typical amnestic presentations of Alzheimer's disease.
Ryan, N.S., Okello, A., Knight, W.D., Lehmann, M., Malone, I., Clarkson, M., ...Thornton, J. (2010). Early subcortical amyloid deposition in familial Alzheimer's disease is accompanied by changes in tissue volume and diffusivity.
Schott, J.M., Bartlett, J.W., Barnes, J., Leung, K.K., Ourselin, S., Fox, N.C. (2010). Reduced sample sizes for atrophy outcomes in Alzheimer's disease trials: baseline adjustment. NEUROBIOL AGING, 31 (8), 1452-1462. doi:10.1016/j.neurobiolaging.2010.04.011
Taylor, Z.A., Crozier, S., Ourselin, S. (2010). Real-time surgical simulation using reduced order finite element analysis..
Taylor, Z.A., Johnsen, S., Ourselin, S. (2010). NiftySim.
Taylor, Z.A., Ourselin, S., Crozier, S. (2010). A reduced order finite element algorithm for surgical simulation..
Visser, H.D., Passenger, J., Conlan, D., Russ, C., Hellier, D., Cheng, M., ...Salvado, O. (2010). Developing a Next Generation Colonoscopy Simulator.. International Journal of Image and Graphics, 10 (02), 203-217. doi:10.1142/S0219467810003731
Yang, G., Hipwell, J.H., Clarkson, M.J., Tanner, C., Mertzanidou, T., Gunn, S., ...Arridge, S.R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis..
Yang, G., Hipwell, J.H., Clarkson, M.J., Tanner, C., Mertzanidou, T., Gunn, S., ...Arridge, S.R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis: Sequential Method versus Iterative Method.
Zhuang, X., Hawkes, D.J., Ourselin, S. (2010). Spatial Information Encoded Mutual Information for Nonrigid Registration..
Zhuang, X., Leung, K., Rhode, K., Razavi, R., Hawkes, D., Ourselin, S. (2010). Whole Heart Segmentation of Cardiac MRI Using Multiple Path Propagation Strategy.
Zhuang, X., Rhode, K.S., Razavi, R.S., Hawkes, D.J., Ourselin, S. (2010). A registration-based propagation framework for automatic whole heart segmentation of cardiac MRI.. IEEE T MED IMAGING, 29 (9), 1612-1625. doi:10.1109/TMI.2010.2047112
Zhuang, X., Yao, C., Ma, Y., Hawkes, D.J., Penney, G.P., Ourselin, S. (2010). Registration-based propagation for whole heart segmentation from compounded 3D echocardiography..

2009

Acosta, O., Bourgeat, P., Zuluaga, M.A., Fripp, J., Salvado, O., Ourselin, S., Alzheimer's Disease Neuroimaging, I. (2009). Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. MED IMAGE ANAL, 13 (5), 730-743. doi:10.1016/j.media.2009.07.003
Allain, B., Hu, M.X., Lovat, L.B., Ourselin, S., Cook, R., Hawkes, D.J. (2009). Biopsy Site Re-localisation based on the Computation of Epipolar Lines from Two Previous Endoscopic Images.
Allain, B., Price, A., Vercauteren, T.K., Cook, R.J., Ourselin, S., Lythgoe, M.F., Hawkes, D.J. (2009). Precision of Confocal Miniprobe Localisation Assessed By High-Field Magnetic Resonance Imaging.
Barnes, J., Ourselin, S., Fox, N.C. (2009). Clinical application of measurement of hippocampal atrophy in degenerative dementias. HIPPOCAMPUS, 19 (6), 510-516. doi:10.1002/hipo.20617
Cardoso, M.J., Clarkson, M.J., Ridgway, G.R., Modat, M., Fox, N.C., Ourselin, S. (2009). Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation of Priors.
Cheng, M., Passenger, J., Salvado, O., Riek, S., Ourselin, S., Watson, M. (2009). Pneumatic Haptic Interface Fuzzy Controller for Simulation of Abdominal Palpations During Colonoscopy.
Clarkson, M.J., Nielsen, C., Leung, K.K., Barnes, J., Whitwell, J.L., Gunter, J., ...The, A.D.N.I.A.D.N.I. (2009). Correction of MRI Scaling Parameters: A comparison of phantom and registration methods on the ADNI dataset.
Clarkson, M.J., Ourselin, S., Nielsen, C., Leung, K.K., Barnes, J., Whitwell, J.L., ...Jack, C.R. (2009). Comparison of phantom and registration scaling corrections using the ADNI cohort. NEUROIMAGE, 47 (4), 1506-1513. doi:10.1016/j.neuroimage.2009.05.045
Cleary, J.O., Modat, M., Price, A.N., NDE, G., Thomas, D.L., Scambler, P.J., ...Lythgoe, M.F. (2009). Phenotyping in the Mouse Embryo using a microMRI atlas.
Dowling, J., Bourgeat, P., Raffelt, D., Fripp, J., Greer, P.B., Patterson, J., ...Stanwell, P. (2009). Nonrigid correction of interleaving artefacts in pelvic MRI. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 7259 doi:10.1117/12.812460
Fripp, J., Bourgeat, P., Engstrom, C., Ourselin, S., Crozier, S., Salvado, O. (2009). AUTOMATED SEGMENTATION OF THE MENISCI FROM MR IMAGES.
Gutiérrez-Galve, L., Lehmann, M., Hobbs, N.Z., Clarkson, M.J., Ridgway, G.R., Crutch, S., ...Barnes, J. (2009). Patterns of cortical thickness according to APOE genotype in Alzheimer's disease.. DEMENT GERIATR COGN, 28 (5), 476-485. doi:10.1159/000258100
Leung, K.K., Clarkson, M.J., Fox, N.C., Ourselin, S. (2009). Robust intensity normalisation and automatic intensity window selection for the calculation of the boundary shift integral.
Modat, M., Ridgway, G.R., Taylor, Z.A., Hawkes, D.J., Fox, N.C., Ourselin, S. (2009). A parallel-friendly normalized mutual information gradient for free-form registration.
Raniga, P., Bourgeat, P., Fripp, J., Acosta, O., Ourselin, S., Rowe, C., ...Salvado, O. (2009). Alzheimer's disease detection using 11C-PiB with improved partial volume effect correction. Progress in Biomedical Optics and Imaging - Proceedings of SPIE, 7262 doi:10.1117/12.813501
Ridgway, G.R., Omar, R., Ourselin, S., Hill, D.L.G., Warren, J.D., Fox, N.C. (2009). Issues with threshold masking in voxel-based morphometry of atrophied brains.. NEUROIMAGE, 44 (1), 99-111. doi:10.1016/j.neuroimage.2008.08.045
Rohrer, J.D., Warren, J.D., Modat, M., Ridgway, G.R., Douiri, A., Rossor, M.N., ...Fox, N.C. (2009). Patterns of cortical thinning in the language variants of frontotemporal lobar degeneration. NEUROLOGY, 72 (18), 1562-1569.
Taylor, Z.A., Comas, O., Cheng, M., Passenger, J., Hawkes, D.J., Atkinson, D., Ourselin, S. (2009). On modelling of anisotropic viscoelasticity for soft tissue simulation: numerical solution and GPU execution.. MED IMAGE ANAL, 13 (2), 234-244. doi:10.1016/j.media.2008.10.001
Thomas, B., Erlandsson, K., Ourselin, S., Thurfjell, L., Hutton, B. (2009). A brain phantom study of iterative deconvolution versus anatomical-based partial-volume correction techniques.
Thomas, B., Thurfjell, L., Rinne, J., Ourselin, S., Hutton, B. (2009). The effects of iterative deconvolution partial-volume correction on beta-amyloid PET.
Zhuang, X., Hawkes, D.J., Ourselin, S. (2009). Unifying encoding of spatial information in mutual information for nonrigid registration.
Zhuang, X., Rhode, K., Razavi, R., Hawkes, D.J., Ourselin, S. (2009). Free-Form Deformations Using Adaptive Control Point Status for Whole Heart MR Segmentation.

2008

Acosta, O., Bourgeat, P., Fripp, J., Bonner, E., Ourselin, S., Salvado, O. (2008). Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR.
Acosta, O., Frimmel, H., Fenster, A., Salvado, O., Ourselin, S. (2008). Pyramidal flux in an anisotropic diffusion scheme for enhancing structures in 3D images - art. no. 691429.
Atkinson, D., Hansen, M.S., Modat, M., Ourselin, S., Sørensen, T.S., Taylor, Z. (2008). Commodity Graphics Cards for Image Registration, Biomechanical Modelling and Cardiac Imaging.
Bourgeat, P., Acosta, O., Zuluaga, M., Fripp, J., Salvado, O., Ourselin, S. (2008). Improved cortical thickness measurement from mr images using partial volume estimation.
Cheng, M., Taylor, Z.A., Ourselin, S. (2008). Towards anatomical modelling of multiple organs interaction using real time GPU based nonlinear elasticity..
Comas, O., Taylor, Z.A., Allard, J., Ourselin, S., Salvado, O., Cotin, S., Passenger, J. (2008). Efficient nonlinear FEM for soft tissue modelling and its GPU implementation within the open source framework SOFA.
de Visser, H., Comas, O., Conlan, D., Ourselin, S., Passenger, J., Salvado, O. (2008). Deforming a high-resolution mesh in real-time by mapping onto a low-resolution physical model.
Erbou, S.G.H., Darkner, S., Fripp, J., Ourselin, S., Ersboll, B.K. (2008). Estimation of shape model parameters for 3D surfaces.
Fripp, J., Bourgeat, P., Acosta, O., Jones, G., Villemagne, V., Ourselin, S., ...Salvado, O. (2008). Generative atlases and atlas selection for C11-PIBPET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients.
Fripp, J., Bourgeat, P., Acosta, O., Raniga, P., Modat, M., Pike, K.E., ...Ames, D. (2008). Appearance modeling of C-11 PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging. NEUROIMAGE, 43 (3), 430-439. doi:10.1016/j.neuroimage.2008.07.053
Fripp, J., Bourgeat, P., Raniga, P., Acosta, O., Villemagne, V., Jones, G., ...Salvado, O. (2008). MR-Less High Dimensional Spatial Normalization of C-11 PiB PET Images on a Population of Elderly, Mild Cognitive Impaired and Alzheimer Disease Patients.
Golland, P., Hata, N., Ourselin, S., Ayache, N. (2008). Advances in radiological image analysis from MICCAI 2007.. Academic radiology, 15 (11), 1345-1346.
Joshi, B., Fedorov, A., Chrisochoides, N., Warfield, S.K., Ourselin, S. (2008). A quantitative assessment of approaches to mesh generation for surgical simulation. ENG COMPUT-GERMANY, 24 (4), 417-430. doi:10.1007/s00366-008-0088-z
Jurcak, V., Fripp, J., Engstrom, C., Walker, D., Salvado, O., Ourselin, S., Crozier, S. (2008). Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region.
Jurcak, V., Fripp, J., Engstrom, C., Walker, D., Salvado, O., Ourselin, S., Crozier, S. (2008). AUTOMATED SEGMENTATION OF THE QUADRATUS LUMBORUM MUSCLE FROM MAGNETIC RESONANCE IMAGES USING A HYBRID ATLAS BASED - GEODESIC ACTIVE CONTOUR SCHEME.
Le, H.D.K., Li, R.X., Ourselin, S., Potter, J. (2008). A Visual Dataflow Language for Image Segmentation and Registration.
Mang, A., Schnabel, J.A., Crum, W.R., Modat, M., Camara-Rey, O., Palm, C., ...Buzug, T.M. (2008). Consistency of parametric registration in serial MRI studies of brain tumor progression. International Journal of Computer Assisted Radiology and Surgery, 3 (3-4), 201-211.
Modat, M., Taylor, Z.A., Barnes, J., Hawkes, D.J., Fox, N.C., Ourselin, S. (2008). Fast Free-Form Deformation using the Normalised Mutual Information gradient and Graphics Processing Units.
Ourselin, S., Ayache, N. (2008). Special issue on the 10th international conference on medical imaging and computer assisted intervention - MICCAI 2007. MED IMAGE ANAL, 12 (5), 525-526. doi:10.1016/j.media.2008.07.001
Ourselin, S., Peters, T.M. (2008). Special Issue in Advances in Computer Aided Surgery from MICCAI 2007. COMPUT AIDED SURG, 13 (5), 241-242. doi:10.1080/10929080802445386
Passenger, J., Acosta, O., de Visser, H., Bauer, S., Russ, C., Ourselin, S. (2008). Texture coordinate generation of colonic surface meshes for surgical simulation.
Raniga, P., Bourgeat, P., Fripp, J., Acosta, O., Villemagne, V.L., Rowe, C., ...Salvado, O. (2008). Automated C-11-PiB Standardized Uptake Value Ratio. ACAD RADIOL, 15 (11), 1376-1389. doi:10.1016/j.acra.2008.07.006
Samur, E., Flaction, L., Spaelter, U., Bleuler, H., Hellier, D., Ourselin, S. (2008). A haptic interface with motor/brake system for colonoscopy simulation.
Taylor, Z.A., Cheng, M., Ourselin, S. (2008). High-speed nonlinear finite element analysis for surgical simulation using graphics processing units. IEEE T MED IMAGING, 27 (5), 650-663. doi:10.1109/TMI.2007.913112
Taylor, Z.A., Comas, O., Cheng, M., Passenger, J., Hawkes, D.J., Atkinson, D., Ourselin, S. (2008). Modelling anisotropic viscoelasticity for real-time soft tissue simulation.
Zhuang, X., Rhode, K., Arridge, S., Razavi, R., Hill, D., Hawkes, D.J., Ourselin, S. (2008). An atlas-based segmentation propagation framework using locally affine registration – Application to automatic whole heart segmentation.
Zuluaga, M.A., Acosta, O., Bourgeat, P., Hoyos, M.H., Salvado, O., Ourselin, S. (2008). Cortical thickness measurement from magnetic resonance images using partial volume estimation - art. no. 69140J.

2007

(2007). Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I.
(2007). Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part II.
Acosta, O., Frimmel, H., Fenster, A., Ourselin, S. (2007). Filtering and restoration of structures in 3D ultrasound images.
Bourgeat, P., Fripp, J., Stanwell, P., Ramadan, S., Ourselin, S. (2007). MR image segmentation of the knee bone using phase information. MED IMAGE ANAL, 11 (4), 325-335. doi:10.1016/j.media.2007.03.003
Chinchapatnam, P., Rhode, K.S., King, A.P., Gao, G., Ma, Y., Schaeffter, T., ...Arridge, S.R. (2007). Anisotropic wave propagation and apparent conductivity estimation in a fast electrophysiological model: Application to XMR interventional imaging.
Diep, T.M., Bourgeat, P., Ourselin, S. (2007). Efficient use of cerebral cortical thickness to correct brain MR segmentation.
Frimmel, H., Acosta, O., Fenster, A., Ourselin, S. (2007). Reduction of attenuation effects in 3D Transrectal Ultrasound images - art. no. 65130Z.
Fripp, J., Bourgeat, P., Crozier, S., Ourselin, S. (2007). Shape based segmentation of MRIs of the bones in the knee using phase and intensity information - art. no. 651212.
Fripp, J., Bourgeat, P., Crozier, S., Ourselin, S. (2007). Segmentation of the bones in MRIs of the knee using phase, magnitude, and shape information.
Fripp, J., Bourgeat, P., Crozier, S., Ourselin, S. (2007). Shape based segmentation of MRIs of the knee using phase and magnitude information. Academic Radiology, 14 (10), 1201-1208.
Fripp, J., Crozier, S., Warfield, S.K., Ourselin, S. (2007). Automatic segmentation of articular cartilage in magnetic resonance images of the knee.
Fripp, J., Crozier, S., Warfield, S., Ourselin, S. (2007). Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. PHYS MED BIOL, 52 (6), 1617-1631. doi:10.1088/0031-9155/52/6/005
Fripp, J., Ourselin, S., Warfield, S.K., Crozier, S. (2007). Automatic segmentation of the bones from MR images of the knee.
Hellier, D., Passenger, J., Appleyard, M.N., Ourselin, S. (2007). Development of a new Colonoscopy Skills Trainer using Virtual Reality and Haptic Feedback.
Holden, M., Moreno-Vallecillo, R., Harris, A., Gomes, L.J., Diep, T.M., Bourgeat, P., Ourselin, S. (2007). Expectation maximisation classification and Laplacian based thickness measurement for cerebral cortex thickness estimation - art. no. 65120M.
Joshi, B., Fedorov, A., Chrisochoides, N., Warfield, S., Ourselin, S. (2007). Application-driven quantitative assessment of approaches to mesh generation.
Lee, B., Popescu, D.C., Ourselin, S. (2007). Progressive Update Approach to Real-time Cutting of Finite Element Models in Surgical Simulation.
Le, H.D.K., Li, R., Ourselin, S., Potter, J.M. (2007). ITKBoard: A visual dataflow language for biomedical image processing.
Li, R., Ourselin, S. (2007). Towards Consistently Behaving Deformable Models for Improved Automation in Image Segmentation. In Suri, J.S., Farag, A. (Eds.), Deformable Models - Theory and Biomaterial Applications. Springer Publishers.
Raniga, P., Bourgeat, P., Ourselin, S., Villemagne, V., O'Keefe, G., Rowe, C. (2007). PIB-PET segmentation for automatic SUVR normalisation without MR information.
Raniga, P., Bourgeat, P., Villemagne, V., O'Keefe, G., Rowe, C., Ourselin, S. (2007). Spline based inhomogeneity correction for C-11-PIB PET segmentation using expectation maximization.
Salvado, O., Bourgeat, P., Tarnayo, O.A., Zuluaga, M., Ourselin, S. (2007). Fuzzy classification of brain MRI using a priori knowledge: weighted fuzzy C-means.
Taylor, Z., Cheng, M., Ourselin, S. (2007). Real-time nonlinear finite element analysis for surgical simulation using graphics processing units.
Vrtovec, T., Ourselin, S., Gomes, L., Likar, B., Pernus, F. (2007). Automatic generation of curved planar reformations from MR images of the spine. PHYS MED BIOL, 52 (10), 2865-2878. doi:10.1088/0031-9155/52/10/015
Yelnik, J., Bardinet, E., Dormont, D., Malandain, G., Ourselin, S., Tand, D., ...Agid, Y. (2007). A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. NEUROIMAGE, 34 (2), 618-638. doi:10.1016/j.neuroimage.2006.09.026

2006

Bourgeat, P., Fripp, J., Stanwell, P., Ramadan, S., Ourselin, S. (2006). MR image segmentation using phase information and a novel multiscale scheme.
Bourgeat, P., Ourselin, S., Stanwell, P., Ramadan, S. (2006). Texture-based segmentation of the knee bones in MRI using phase information.
Fripp, J., Crozier, S., Warfield, S.K., Ourselin, S. (2006). A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages - art. no. 614123.
Fripp, J., Crozier, S., Warfield, S.K., Ourselin, S. (2006). Automatic segmentation of the knee bones using 3D active shape models.
Lee, B., Popescu, D.C., Joshi, B., Ourselin, S. (2006). Efficient Topology Modification and Deformation for Finite Element Models Using Condensation.
Li, R.X., Ourselin, S. (2006). Using marker-based deformable models for deriving anatomical models from medical image databases.
Vrtovec, T., Ourselin, S., Gomes, L., Likar, B., Pernus, F. (2006). Generation of curved planar reformations from magnetic resonance images of the spine.

2005

Bourgeat, P., Fripp, J., Janke, A., Galloway, G., Crozier, S., Ourselin, S. (2005). The use of unwrapped phase in MR image segmentation: A preliminary study.
Fripp, J., Bourgeat, P., Mewes, A.J.U., Warfield, S.K., Crozier, S., Ourselin, S. (2005). 3D statistical shape models to embed spatial relationship information.
Fripp, J., Crozier, S., Warfield, S.K., Ourselin, S. (2005). Automatic Initialization of 3D Deformable Models for Cartilage Segmentation..
Fripp, J., Ourselin, S., Warfield, S., Mewes, A., Crozier, S. (2005). Automatic Generation of 3D Statistical Shape Models of the Knee Bones.
Joshi, B., Lee, B., Popescu, D.C., Ourselin, S. (2005). Multiple Contact Approach to Collision Modelling in Surgical Simulation.
Le, H.D.K., Rongxin, L., Ourselin, S. (2005). Towards a visual programming environment based on ITK for medical image analysis. Proceedings of the Digital Imaging Computing: Techniques and Applications, DICTA 2005, 2005 558-565. doi:10.1109/DICTA.2005.1578178
Li, R., McLean, D., Ourselin, S. (2005). Vector-field-based deformable models for radiation dosimetry.
Li, R.X., Ourselin, S. (2005). A marker-induced vector field for reduced sensitivity to initialization for parametric and geometric deformable models.
Ourselin, S., Li, R.X. (2005). Extension of deformable models: Hybrid approaches for analysis of medical images.
Popescu, D.C., Joshi, B., Ourselin, S. (2005). Real-time topology modification for finite element models with haptic feedback.
Saxena, A., Gupta, G., Gerasimov, V., Ourselin, S. (2005). In use parameter estimation of inertial sensors by detecting multilevel quasi-static states.

2004

Lee, B., Popescu, D., Ourselin, S. (2004). Contact modelling based on displacement field redistribution for surgical simulation.

2003

(2003). Proceedings of the Seventh International Conference on Digital Image Computing: Techniques and Applications, DICTA 2003, 10-12 December 2003, Macquarie University, Sydney, Australia.
Joshi, B., Ourselin, S. (2003). BSP-Assisted Constrained Tetrahedralization.
Li, R., Ourselin, S. (2003). Accurate Curvilinear Modeling for Precise Measurements of Tubular Structures.
Li, R., Ourselin, S. (2003). Accurate Curvilinear Modelling for Surgical Planning Purposes.
Li, R.X., Ourselin, S. (2003). Combining front propagation with shape knowledge for accurate curvilinear modelling.
Luo, S., Li, R., Ourselin, S. (2003). A New Deformable Model Using Dynamic Gradient Vector Flow and Adaptive Balloon Forces.
Ourselin, S. (2003). An Overview of Medical Image Segmentation.

2002

Bardinet, E., Ourselin, S., Dormont, D., Malandain, G., Tande, D., Parain, K., ...Yelnik, J. (2002). Co-registration of histological, optical and MR data of the human brain.
Bardinet, E., Ourselin, S., Malandain, G., Tande, D., Parain, K., Ayache, N., Yelnik, J. (2002). Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections.
Ourselin, S., Benezery, K., Wilson, L. (2002). Towards Prostate Cancer Radiotherapy Planning Improvement Using Atlas Propagation.
Ourselin, S., Pennec, X., Stefanescu, R. (2002). Robust Registration of Multi-Modal Images: Towards Real-Time Clinical Applications. .
Prima, S., Ourselin, S., Ayache, N. (2002). Computation of the Mid-Sagittal Plane in 3D Brain Images. IEEE T MED IMAGING, 21 (2), 122-138.

2001

Bardinet, E., Colchester, A.C.F., Roche, A., Zhu, Y., He, Y., Ourselin, S., ...Al-Sarraj, S. (2001). Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient..
Delingette, H., Bardinet, E., Rey, D., Lemarechal, J.D., Montagnat, J., Ourselin, S., ...Ayache, N. (2001). YAV++: a Software Platform for Medical Image Processing and Visualization.
Ourselin, S., Bardinet, E., Dormont, D., Malandain, G., Roche, A., Ayache, N., ...Yelnik, J. (2001). Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia..
Ourselin, S., Roche, A., Subsol, G., Pennec, X., Ayache, N. (2001). Reconstructing a 3D Structure from Serial Histological Sections. IMAGE AND VISION COMPUTING, 19 (1-2), 25-31.

2000

Colchester, A., Ourselin, S., Zhu, Y.G., Bardinet, E., He, Y., Roche, A., ...Ayache, N. (2000). 3-D reconstruction of macroscopic optical brain slice images.
Ourselin, S., Roche, A., Prima, S., Ayache, N. (2000). Block matching: A general framework to improve robustness of rigid registration of medical images.
Prima, S., Ourselin, S., Ayache, N. (2000). Computation of the Mid-Sagittal Plane in 3D Medical Images of the Head. .
Roche, A., Pennec, X., Malandain, G., Ayache, N., Ourselin, S. (2000). GeneralizAU Correlation Ratio for Rigid Registration of 3D Ultrasound with MR Images. SPRINGER-VERLAG BERLIN.

1999

Ourselin, S., Sattonnet, C., Roche, A., Subsol, G. (1999). Automatic alignement of histological sections for 3D reconstruction and analysis.

1998

Ourselin, S., Roche, A., Subsol, G., Pennec, X. (1998). Automatic Alignment of Histological Sections for 3D Reconstruction and Analysis. INRIA.
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