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Sebastien Ourselin

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Sebastien Ourselin

 

Interested to do a PhD or PostDoc in my group? Please send me an e-mail or look at the current positions we have available.

 

The 6th International Workshop on Biomedical Image Registration will be hosted in University College London, UK on the 7th and 8th of July 2014. The website can be found here.

  

Enhancing translation from bench to bedside using computational imaging 

Click here to try out our latest suite of free, open-source software!

Our Research is mainly focused on the development of novel imaging biomarkers.  We are taking advantage of state-of-the-art algorithms developed within CMIC and the internationally leading clinical research at UCL to design robust and innovative software for clinical trials (Phase 2 and 3).  Robust software plays a critical role in clinical trials and will result in improved healthcare delivery to patients. 

Translational Imaging Platform: Our team is leading the translational imaging research program between CMIC and the Institute of Neurology, and has established in collaboration with Prof Nick Fox a new imaging unit at Queen Square to deliver novel imaging biomarkers for clinical trials. Our Grand Challenge is to develop the fundamental building blocks enabling research at IoN - and beyond after first proof of concept - to take full advantage of a common software environment platform, facilitating the development and rapid deployment of complex and robust pipelines that have applications across diseases and research questions (M. Clarkson, G. Zombori). 

NifTK: as part of our effort to translate image analysis tools to the clinic, we are also strongly involved into fast image processing using GPU and support of the open source community. Our team has been developing a set of self contain software packages for image registration (NiftyReg), segmentation (NiftySeg), reconstruction (NiftyRec), but also for biomechanical modeling (NiftySim). All these packages are downloadable from the CMIC website and available under SourceForge.

 Alzheimer’s Disease: Imaging biomarkers now play a key role in both basic and applied research and are increasingly seen as important in diagnosis, drug discovery and therapeutic trials. In collaboration with the Dementia Research Centre (N. Fox, M. Rossor) and IXICO (D. Hill) we are developing novel imaging biomarkers for Alzheimer’s disease using MR and PET images, enabling the robust and automatic measure of disease progression and disease modification.  We have been focusing on whole brain atrophy (K. Leung), hippocampus (J. Barnes, K. Leung), cortical thickness (M. Clarkson, J. Cardoso), longitudnal analysis (M. Modat), DTI (S. Keihaninejad) and more recently PIB uptake (A. Andrews) and classification (J. Young). These imaging biomarkers are currently used in many clinical trials, including large international activities, such as the ADNI and DIAN initiatives. 

iMRI Neurosurgery: Being able to obtain high quality MR images during surgery is opening new opportunities to update the surgical planning during the surgery. In collaboration with the IoN (T. Yousry, J. Thornton) and NHNN (A. McEvoy), we are developing near real-time registration algorithms to combine pre-operative images with intra-operative images (P. Daga, M. Modat). This is opening exciting opportunities to improve surgical outcomes, especially in epilepsy surgery (J. Duncan, G. Watson). 

Improving PET and SPECT image reconstruction: PET and SPECT are functional imaging techniques that find application in diagnosis of ischemic heart disease, mapping of local brain metabolism, drug development and detection of tumors and areas of infection. In collaboration with S. Arridge and INM (B. Hutton), we are investigating the correlation of drug distribution with the underlying tissue morphology and consequently the use of information from other imaging modalities, such as MRI and CT, to improve the quantification of pharmaceutical distribution. (S. Pedemonte, D. Kazantsev). 

Phenotyping: In collaboration with our team, CABI (M. Lythgoe) develops imaging techniques to investigate the anatomical, structural and functional contributions of genes to human diseases and development using genetically modified mice. Our research effort is this large and multidisciplinary project is to provide image analysis capability for high-throughput high-resolution imaging (M. Modat, J. Cardoso). 

Cardiac Imaging: we are working with KCL (R. Rezavi, S. Smith), Imperial College (D. Rueckert), and GOSH (A. Taylor) to develop fully automatic 3D and 4D anatomical models of the heart. Specifically, our main research is the development of registration and segmentation algorithms (X. Zhuang) using MR and Ultrasound images. 

Neonatal Imaging: Very premature children are at risk of learning difficulties in childhood that are underpinned by slow processing of information and poor everyday memory.  We wish to find out how measureable these are in infancy and whether they relate to brain growth after birth, In collaboration with the UCL Institute for Women’s Health (N. Marlow, N. Roberston) we are developing novel robust MR biomarkers to speed up clinical translation of neuroprotective agents which will have a positive benefit to the neurocognitive outcome of the premature children (A. Melbourne).

Our Current team includes the following people: 

Team Support:

  • Dominique Drai (PA)
  • Jenny Nery (Project Manager)

Research Associates:

  • Dr. Jorge Cardoso
  • Dr. Dave Cash (jointly with DRC)
  • Mr. Pankaj Daga
  • Dr. Kirsi Kinnunen (jointly with DRC)
  • Ms. Jieqing Jiao
  • Dr. Kelvin Leung (jointly with DRC)
  • Dr. Pawel Markiewicz
  • Dr. Andrew Melbourne
  • Dr. Marc Modat 
  • Dr. Ferran Prados (jointly with the Department of Neuroinflammation)
  • Dr. Ivor Simpson (jointly with DRC)
  • Dr. Nicolas Toussaint
  • Dr. Maria Zuluaga

MR Physicist: 

  • Dr. David Thomas

Research Engineers: 

  • Dr. Miklos Espak (jointly with DRC)
  • Dr. Gergely Zombori

Post-graduate students: 

  • Abigail Andrews
  • Ninon Burgos
  • Ma Da
  • Zachary Eaton-Rosen
  • Albert Hoang Duc
  • Michael Hutel
  • Stian Johnsen
  • Christian Klemt
  • Alexander Mendelson
  • Eliza Orasanu
  • Christopher Parker (jointly with Jonathan Clayden)
  • Jonas Pichat
  • Nicholas Powell
  • Carole Sudre
  • Jonathan Young

Main Internal Collaborators:

  • [Dementia] Nick Fox, Martin Rossor, Jason Warren, Josephine Barnes, Jonathan Schott, Jonathan Rohrer, Daniel Alexander, Gary Zhang
  • [Epilepsy] John Duncan, Andrew Mcevoy, Caroline Micallef
  • [Multiple Sclerosis] Claudia Wheeler Kingshott, David Miller
  • [Neonatal] Neil Marlow, Nikki Roberston
  • [MRI] Xavier Golay, David Thomas, John Thornton
  • [Nuclear Medicine] Brian Hutton, Simon Arridge
  • [Preclinical] Mark Lythgoe
  • [Cardiology] Andrew Taylor

Main External Collaborators:

  • [Imperial College] Daniel Rueckert
  • [KCL] Reza Razavi
  • [INRIA] Nicholas Ayache, Xavier Pennec

Alumni:

  • Dr. Shiva Keihaninejad
  • Dr. Daniil Kazantsev
  • Mr. Stefano Pedemonte
  • Dr. Gerard Ridgway
  • Dr. Zeike Talyor
  • Dr. Xiahai Zhuang

Short Biography: Dr Sebastien Ourselin is the Deputy Director of the Centre for Medical Image Computing (CMIC) and Professor of Medical Image Computing. He obtained his PhD in Computer Science from INRIA (France) in the field of medical image analysis under the supervision of Prof. Nicholas Ayache. He has published over 200 journal and conference articles. He is an associate editor of IEEE Transactions on Medical Imaging and a member of the Editorial Board of Medical Image Analysis. He is a MICCAI Board Member since 2008, and was elected Executive Secretary of the MICCAI Society (2009-2012).

Dr. Ourselin is leading the translational imaging research program between CMIC and the Institute of Neurology, and has established in collaboration with Prof Nick Fox a new imaging unit at Queen Square to deliver novel imaging biomarkers for clinical trials.

His main research interests include image registration, segmentation, molecular imaging, atlas conception, statistical shape modeling, surgical simulation, image-guided therapy and minimally invasive surgery. He has been involved in a broad range of clinical projects, including neuroimaging, neurosurgery, computer-assisted cardiovascular surgery, radiotherapy treatment, colonoscopy, and orthopaedic imaging. His research is often collaborative, involving clinical and commercial partners.

Before joining UCL, he founded and led the CSIRO BioMedIA Lab (2003-2007), Australia. He headed a 17-strong government funded research group in biomedical image analysis and surgical simulation. He led the development of the MILX platform, now distributed to Australian hospital partners. He also established and led the image analysis research program of the AIBL study, and the development of a successfully commercialized surgical simulator for colonoscopy. In less than 4 years, his laboratory became the research leader in medical image analysis and surgical simulation in Australia. BioMedIA Lab is still existing and thriving (see: aehrc.com/biomedical_imaging/). In Australia, he is still currently adjunct A/Prof at the University of Queensland (joint appointment Faculty of Health Sciences and School of Information Technology and Electrical Engineering), adjunct A/Prof at the University of New South Wales, Graduate School of Biomedical Engineering. He is also Honorary Medical Physicist at Westmead Hospital (Sydney, Australia), Department of Radiology. Until December 2007, he was President of the Australian Pattern Recognition Society (http://www.aprs.org.au). 

He has been actively involved in conference organization nationally and internationally. He is chair of the Image Processing conference of SPIE Medical Imaging (2012-2015). He has been part of the MICCAI Program Committee since 2005, and was Program co-chair of MICCAI 2007. He was co-chair of MMBIA 2012 in Breckenridge (USA), and is currently co-chair of FIMH 2013 in London (UK) and IPMI 2015.

Contact Details:
University College London
Centre for Medical Image Computing
3rd Floor
Engineering Front Building 
Malet Place
London WC1E 6BT
United Kingdom

Office: 3.03
Tel: +44 (0)20 7679 0221 (Direct Dial)

 

Publications

2014

Fuin, N., Pedemonte, S., Arridge, S., Ourselin, S., Hutton, B. F. (2014). Efficient Determination of the Uncertainty for the Optimization of SPECT System Design: A Subsampled Fisher Information Matrix. IEEE Trans Med Imaging 33(3), 618-635 doi:10.1109/TMI.2013.2292805. Author URL
Han, L., Hipwell, J., Eiben, B., Barratt, D. C., Ourselin, S., Hawkes, D. J. (2014). A nonlinear biomechanical model based registration method for aligning prone and supine mr breast images. IEEE Transactions on Medical Imaging doi:10.1109/TMI.2013.2294539. [Accepted]
Macdonald, K. E., Leung, K. K., Bartlett, J. W., Blair, M., Malone, I. B., Barnes, J., Ourselin, S., Fox, N. C., for the Alzheimer’s Disease Neuroimaging Initiative, (2014). Automated Template-Based Hippocampal Segmentations from MRI: The Effects of 1.5T or 3T Field Strength on Accuracy. Neuroinformatics doi:10.1007/s12021-013-9217-y. Author URL
Mahoney, C. J., Ridgway, G. R., Malone, I. B., Downey, L. E., Beck, J., Kinnunen, K. M., Schmitz, N., Golden, H. L., Rohrer, J. D., Schott, J. M., Rossor, M. N., Ourselin, S., Mead, S., Fox, N. C., Warren, J. D. (2014). Profiles of white matter tract pathology in frontotemporal dementia. Hum Brain Mapp doi:10.1002/hbm.22468. Author URL
Samson, R. S., Cardoso, M. J., Muhlert, N., Sethi, V., Wheeler-Kingshott, C. A., Ron, M., Ourselin, S., Miller, D. H., Chard, D. T. (2014). Investigation of outer cortical magnetisation transfer ratio abnormalities in multiple sclerosis clinical subgroups. Mult Scler doi:10.1177/1352458514522537. Author URL
Veiga, C., McClelland, J., Moinuddin, S., Lourenço, A., Ricketts, K., Annkah, J., Modat, M., Ourselin, S., D'Souza, D., Royle, G. (2014). Toward adaptive radiotherapy for head and neck patients: Feasibility study on using CT-to-CBCT deformable registration for "dose of the day" calculations. Med Phys 41(3), 031703- doi:10.1118/1.4864240. Author URL

2013

Allan, M., Ourselin, S., Thompson, S., Hawkes, D. J., Kelly, J., Stoyanov, D. (2013). Toward detection and localization of instruments in minimally invasive surgery. IEEE Trans Biomed Eng 60(4), 1050-1058 doi:10.1109/TBME.2012.2229278. Author URL
Allan, M., Ourselin, S., Thompson, S., Hawkes, D. J., Kelly, J., Stoyanov, D. (2013). Toward Detection and Localization of Instruments in Minimally Invasive Surgery. IEEE Trans. Biomed. Engineering 60, 1050-1058, 4 doi:10.1109/TBME.2012.2229278.
Andrews, K. A., Modat, M., Macdonald, K. E., Yeatman, T., Cardoso, M. J., Leung, K. K., Barnes, J., Villemagne, V. L., Rowe, C. C., Fox, N. C., Ourselin, S., Schott, J. M., the Australian Imaging Biomarkers,, Lifestyle Flagship Study of Ageing, (2013). Atrophy Rates in Asymptomatic Amyloidosis: Implications for Alzheimer Prevention Trials. PLoS ONE 8(3), e58816- doi:10.1371/journal.pone.0058816. Author URL
Benzinger, T. L., Blazey, T., Jack, C. R., Koeppe, R. A., Su, Y., Xiong, C., Raichle, M. E., Snyder, A. Z., Ances, B. M., Bateman, R. J., Cairns, N. J., Fagan, A. M., Goate, A., Marcus, D. S., Aisen, P. S., Christensen, J. J., Ercole, L., Hornbeck, R. C., Farrar, A. M., Aldea, P., Jasielec, M. S., Owen, C. J., Xie, X., Mayeux, R., Brickman, A., McDade, E., Klunk, W., Mathis, C. A., Ringman, J., Thompson, P. M., Ghetti, B., Saykin, A. J., Sperling, R. A., Johnson, K. A., Salloway, S., Correia, S., Schofield, P. R., Masters, C. L., Rowe, C., Villemagne, V. L., Martins, R., Ourselin, S., Rossor, M. N., Fox, N. C., Cash, D. M., Weiner, M. W., Holtzman, D. M., Buckles, V. D., Moulder, K., Morris, J. C. (2013). Regional variability of imaging biomarkers in autosomal dominant Alzheimer's disease. Proc Natl Acad Sci U S A doi:10.1073/pnas.1317918110. Author URL
Burgos, N., Cardoso, M. J., Modat, M., Pedemonte, S., Arridge, S. R., Ourselin, S., Dickson, J., Barnes, A., Hutton, B. F., Duncan, J. S., Atkinson, D. (2013). Attenuation correction synthesis for hybrid PET-MR scanners. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). ( Vol. 8149 LNCS pp.147-154).
Burgos, N., Cardoso, M. J., Modat, M., Pedemonte, S., Dickson, J., Barnes, A., Duncan, J. S., Atkinson, D., Arridge, S. R., Hutton, B. F., Ourselin, S. (2013). Attenuation correction synthesis for hybrid PET-MR scanners. Med Image Comput Comput Assist Interv. ( Vol. 16 pp.147-154). Author URL
Cardoso, M. J., Melbourne, A., Kendall, G. S., Modat, M., Robertson, N. J., Marlow, N., Ourselin, S. (2013). AdaPT: An adaptive preterm segmentation algorithm for neonatal brain MRI. Neuroimage 65, 97-108 doi:10.1016/j.neuroimage.2012.08.009. Author URL
Cash, D. M., Ridgway, G. R., Liang, Y., Ryan, N. S., Kinnunen, K. M., Yeatman, T., Malone, I. B., Benzinger, T. L., Jack, C. R., Thompson, P. M., Ghetti, B. F., Saykin, A. J., Masters, C. L., Ringman, J. M., Salloway, S. P., Schofield, P. R., Sperling, R. A., Cairns, N. J., Marcus, D. S., Xiong, C., Bateman, R. J., Morris, J. C., Rossor, M. N., Ourselin, S., Fox, N. C., On behalf of the Dominantly Inherited Alzheimer Network (DIAN), (2013). The pattern of atrophy in familial alzheimer disease: Volumetric MRI results from the DIAN study. Neurology doi:10.1212/WNL.0b013e3182a841c6. Author URL
Daga, P., Modat, M., Winston, G., White, M., Mancini, L., Mcevoy, A. W., Thornton, J., Yousry, T., Duncan, J. S., Ourselin, S. (2013). Susceptibility artefact correction by combining B0 field maps and non-rigid registration using graph cuts. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. ( Vol. 8669 ).
Eiben, B., Han, L., Hipwell, J., Mertzanidou, T., Ourselin, S., Hawkes, D. J., Kabus, S., Buelow, T., Lorenz, C., Newstead, G. M., Abe, H., Keshtgar, M. (2013). Biomechanically guided prone-to-supine image registration of breast MRI using an estimated reference state. Proceedings - International Symposium on Biomedical Imaging. ( pp.214-217).
Hoang Duc, A. K., Modat, M., Leung, K. K., Cardoso, M. J., Barnes, J., Kadir, T., Ourselin, S. (2013). Using Manifold Learning for Atlas Selection in Multi-Atlas Segmentation. PLoS ONE 8(8), e70059-e70059 doi:10.1371/journal.pone.0070059.
Hutton, B. F., Thomas, B. A., Erlandsson, K., Bousse, A., Reilhac-Laborde, A., Kazantsev, D., Pedemonte, S., Vunckx, K., Arridge, S. R., Ourselin, S. (2013). What approach to brain partial volume correction is best for PET/MRI? NUCLEAR INSTRUMENTS & METHODS IN PHYSICS RESEARCH SECTION A-ACCELERATORS SPECTROMETERS DETECTORS AND ASSOCIATED EQUIPMENT 702, 29-33 doi:10.1016/j.nima.2012.07.059. Author URL
Jorge Cardoso, M., Leung, K., Modat, M., Keihaninejad, S., Cash, D., Barnes, J., Fox, N. C., Ourselin, S., Alzheimer’s Disease Neuroimaging Initiative, (2013). STEPS: Similarity and Truth Estimation for Propagated Segmentations and its application to hippocampal segmentation and brain parcelation. Med Image Anal 17(6), 671-684 doi:10.1016/j.media.2013.02.006. Author URL
Keihaninejad, S., Zhang, H., Ryan, N. S., Malone, I. B., Modat, M., Cardoso, J., Cash, D., Fox, N. C., Ourselin, S. (2013). An unbiased longitudinal analysis framework for tracking white matter changes using diffusion tensor imaging with application to Alzheimer's disease. NeuroImage doi:10.1016/j.neuroimage.2013.01.044.
Kendall, G. S., Melbourne, A., Johnson, S., Price, D., Bainbridge, A., Gunny, R., Huertas-Ceballos, A., Cady, E. B., Ourselin, S., Marlow, N., Robertson, N. J. (2013). White matter NAA/Cho and Cho/Cr ratios at MR spectroscopy are predictive of motor outcome in preterm infants. Radiology , 122679- doi:10.1148/radiol.13122679. Author URL
Leung, K. K., Bartlett, J. W., Barnes, J., Manning, E. N., Ourselin, S., Fox, N. C., Alzheimer's Disease Neuroimaging Initiative, (2013). Cerebral atrophy in mild cognitive impairment and Alzheimer disease Rates and acceleration. Neurology 80(7), 648-654 doi:10.1212/WNL.0b013e318281ccd3. Author URL
Liu, L., Shi, W., Rueckert, D., Hu, M., Ourselin, S., Zhuang, X. (2013). Model-guided directional minimal path for fully automatic extraction of coronary centerlines from cardiac CTA. MICCAI (1). ( Vol. 8149 pp.542-549). Springer. Publisher URL
Mahoney, C. J., Malone, I. B., Ridgway, G. R., Buckley, A. H., Downey, L. E., Golden, H. L., Ryan, N. S., Ourselin, S., Schott, J. M., Rossor, M. N., Fox, N. C., Warren, J. D. (2013). White matter tract signatures of the progressive aphasias. Neurobiol Aging 34(6), 1687-1699 doi:10.1016/j.neurobiolaging.2012.12.002. Author URL
Malone, I. B., Cash, D., Ridgway, G. R., MacManus, D. G., Ourselin, S., Fox, N. C., Schott, J. M. (2013). MIRIAD-Public release of a multiple time point Alzheimer's MR imaging dataset. Neuroimage 70, 33-36 doi:10.1016/j.neuroimage.2012.12.044. Author URL
Melbourne, A., Eaton-Rosen, Z., Bainbridge, A., Kendall, G. S., Cardoso, M. J., Robertson, N. J., Marlow, N., Ourselin, S. (2013). Measurement of myelin in the preterm brain: Multi-compartment diffusion imaging and multi-component T relaxometry. MICCAI (2). ( Vol. 8150 pp.336-344). Springer. Publisher URL
Melbourne, A., Kendall, G. S., Cardoso, M. J., Gunny, R., Robertson, N. J., Marlow, N., Ourselin, S. (2013). Preterm birth affects the developmental synergy between cortical folding and cortical connectivity observed on multimodal MRI. Neuroimage doi:10.1016/j.neuroimage.2013.11.048. Author URL
Muhlert, N., Sethi, V., Schneider, T., Daga, P., Cipolotti, L., Haroon, H. A., Parker, G. J., Ourselin, S., Wheeler-Kingshott, C. A., Miller, D. H., Ron, M. A., Chard, D. T. (2013). Diffusion MRI-based cortical complexity alterations associated with executive function in multiple sclerosis. J Magn Reson Imaging 38(1), 54-63 doi:10.1002/jmri.23970. Author URL
Norris, F. C., Modat, M., Cleary, J. O., Price, A. N., McCue, K., Scambler, P. J., Ourselin, S., Lythgoe, M. F. (2013). Segmentation propagation using a 3D embryo atlas for high-throughput MRI phenotyping: Comparison and validation with manual segmentation. Magn Reson Med 69(3), 877-883 doi:10.1002/mrm.24306. Author URL
Ourselin, S., Rueckert, D., Smith, N. (Eds.) (2013). Functional Imaging and Modeling of the Heart - 7th International Conference, FIMH 2013, London, UK, June 20-22, 2013. Proceedings. FIMH. ( Vol. 7945 ). Springer.
Petersen, J., Modat, M., Cardoso, M. J., Dirksen, A., Ourselin, S., Bruijne, M. D. (2013). Quantitative airway analysis in longitudinal studies using groupwise registration and 4D optimal surfaces. MICCAI (2). ( Vol. 8150 pp.287-294). Springer. Publisher URL
Rodionov, R., Vollmar, C., Nowell, M., Miserocchi, A., Wehner, T., Micallef, C., Zombori, G., Ourselin, S., Diehl, B., McEvoy, A. W., Duncan, J. S. (2013). Feasibility of multimodal 3D neuroimaging to guide implantation of intracranial EEG electrodes. Epilepsy Res doi:10.1016/j.eplepsyres.2013.08.002. Author URL
Roth, H., McClelland, J., Hampshire, T., Boone, D., Hu, Y., Modat, M., Zhang, H., Ourselin, S., Halligan, S., Hawkes, D. J. (2013). Registration of prone and supine CT colonography datasets with differing endoluminal distension. Abdominal Imaging. ( Vol. 8198 pp.29-38). Springer. Publisher URL
Roth, H. R., McClelland, J. R., Modat, M., Hampshire, T. E., Boone, D. J., Helbren, E., Plumb, A., Hu, M., Ourselin, S., Halligan, S., Hawkes, D. J. (2013). CT colonography: Inverse-consistent symmetric registration of prone and supine inner colon surfaces. MEDICAL IMAGING 2013: IMAGE PROCESSING. ( Vol. 8669 ). Author URL
Ryan, N. S., Keihaninejad, S., Shakespeare, T. J., Lehmann, M., Crutch, S. J., Malone, I. B., Thornton, J. S., Mancini, L., Hyare, H., Yousry, T., Ridgway, G. R., Zhang, H., Modat, M., Alexander, D. C., Rossor, M. N., Ourselin, S., Fox, N. C. (2013). Magnetic resonance imaging evidence for presymptomatic change in thalamus and caudate in familial Alzheimer's disease. Brain 136(Pt 5), 1399-1414 doi:10.1093/brain/awt065. Author URL
Scahill, R. I., Ridgway, G. R., Barnes, J., Ryan, N. S., Clarkson, M. J., Foster, J., Crutch, S. J., Schott, J. M., Ourselin, S., Warren, J. D., Hardy, J., Rossor, M. N., Fox, N. C. (2013). Genetic influences on atrophy patterns in familial alzheimer's disease: A comparison of APP and PSEN1 mutations. Journal of AD 35, 199-212 doi:10.3233/JAD-121255.
Simonyan, K., Zisserman, A., Modat, M., Ourselin, S., Cash, D., Criminisi, A. (2013). Immediate ROI search for 3-D medical images. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7723 LNCS, 56-67 doi:10.1007/978-3-642-36678-9_6.
Simpson, I. J. A., Woolrich, M. W., Cardoso, M. J., Cash, D. M., Modat, M., Schnabel, J. A., Ourselin, S. (2013). A Bayesian approach for spatially adaptive regularisation in non-rigid registration. MICCAI (2). ( Vol. 8150 pp.10-18). Springer. Publisher URL
Thomas, B. A., Erlandsson, K., Bousse, A., Hutton, B. F., Drobnjak, I., Pedemonte, S., Ourselin, S., Vunckx, K., Reilhac-Laborde, A. (2013). Framework for the construction of a Monte Carlo simulated brain PET-MR image database. Nuclear Instruments and Methods in Physics Research, Section A: Accelerators, Spectrometers, Detectors and Associated Equipment doi:10.1016/j.nima.2013.08.063.
Tobon-Gomez, C., De Craene, M., McLeod, K., Tautz, L., Shi, W., Hennemuth, A., Prakosa, A., Wang, H., Carr-White, G., Kapetanakis, S., Lutz, A., Rasche, V., Schaeffter, T., Butakoff, C., Friman, O., Mansi, T., Sermesant, M., Zhuang, X., Ourselin, S., Peitgen, H. O., Pennec, X., Razavi, R., Rueckert, D., Frangi, A. F., Rhode, K. S. (2013). Benchmarking framework for myocardial tracking and deformation algorithms: An open access database. Med Image Anal 17(6), 632-648 doi:10.1016/j.media.2013.03.008. Author URL
Winston, G. P., Cardoso, M. J., Williams, E. J., Burdett, J. L., Bartlett, P. A., Espak, M., Behr, C., Duncan, J. S., Ourselin, S. (2013). Automated hippocampal segmentation in patients with epilepsy: Available free online. Epilepsia doi:10.1111/epi.12408. Author URL
Xi, J., Lamata, P., Niederer, S., Land, S., Shi, W., Zhuang, X., Ourselin, S., Duckett, S. G., Shetty, A. K., Rinaldi, C. A., Rueckert, D., Razavi, R., Smith, N. P. (2013). The estimation of patient-specific cardiac diastolic functions from clinical measurements. Med Image Anal 17(2), 133-146 doi:10.1016/j.media.2012.08.001. Author URL
Young, J., Modat, M., Cardoso, M. J., Mendelson, A., Cash, D., Ourselin, S. (2013). Accurate multimodal probabilistic prediction of conversion to Alzheimer's disease in patients with mild cognitive impairment. NeuroImage: Clinical 2(1), 735-745
Zuluaga, M. A., Cardoso, M. J., Modat, M., Ourselin, S. (2013). Multi-atlas propagation whole heart segmentation from MRI and CTA using a local normalised correlation coefficient criterion. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7945 LNCS, 174-181 doi:10.1007/978-3-642-38899-6_21.

2012

Allain, B., Hu, M., Lovat, L. B., Cook, R. J., Vercauteren, T., Ourselin, S., Hawkes, D. J. (2012). Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty. Med Image Anal 16(2), 482-496 doi:10.1016/j.media.2011.11.005. Author URL
Alner, K., Hyare, H., Mead, S., Rudge, P., Wroe, S., Rohrer, J. D., Ridgway, G. R., Ourselin, S., Clarkson, M., Hunt, H., Fox, N. C., Webb, T., Collinge, J., Cipolotti, L. (2012). Distinct neuropsychological profiles correspond to distribution of cortical thinning in inherited prion disease caused by insertional mutation. J Neurol Neurosurg Psychiatry 83(1), 109-114 doi:10.1136/jnnp-2011-300167. Author URL
Bousse, A., Panagiotou, C., Erlandsson, K., Ourselin, S., Arridge, S., Hutton, B. F. (2012). Monotonic Algorithm for Joint Entropy-Based Anatomical Priors in Parametric PET Image Reconstruction. 2012 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE RECORD (NSS/MIC). ( pp.3918-3924). Author URL
Bousse, A., Pedemonte, S., Thomas, B. A., Erlandsson, K., Ourselin, S., Arridge, S., Hutton, B. F. (2012). Markov random field and Gaussian mixture for segmented MRI-based partial volume correction in PET. Phys Med Biol 57(20), 6681-6705 doi:10.1088/0031-9155/57/20/6681. Author URL
Cardoso, M. J., Winston, G., Modat, M., Keihaninejad, S., Duncan, J., Ourselin, S. (2012). Geodesic shape-based averaging. Med Image Comput Comput Assist Interv. ( Vol. 15 pp.26-33). Author URL
Cardoso, M. J., Wolz, R., Modat, M., Fox, N. C., Rueckert, D., Ourselin, S. (2012). Geodesic information flows. Med Image Comput Comput Assist Interv. ( Vol. 15 pp.262-270). Author URL
Cash, D. M., Melbourne, A., Modat, M., Machado, M., Clarkson, M., Fox, N., Ourselin, S. (2012). Cortical folding analysis on patients with Alzheimer's disease and mild cognitive impairment. Lecture Notes in Computer Science. ( Vol. 7512 pp.289-296). Berlin/Heidelberg Springer. Publisher URL
Cheng, M., Marinovic, W., Watson, M., Ourselin, S., Passenger, J., De Visser, H., Salvado, O., Riek, S. (2012). Abdominal Palpation Haptic Device for Colonoscopy Simulation Using Pneumatic Control. IEEE TRANSACTIONS ON HAPTICS 5(2), 97-108 doi:10.1109/ToH.2011.66. Author URL
Fonteijn, H. M., Modat, M., Clarkson, M. J., Barnes, J., Lehmann, M., Hobbs, N. Z., Scahill, R. I., Tabrizi, S. J., Ourselin, S., Fox, N. C., Alexander, D. C. (2012). An event-based model for disease progression and its application in familial Alzheimer's disease and Huntington's disease. Neuroimage 60(3), 1880-1889 doi:10.1016/j.neuroimage.2012.01.062. Author URL
Han, L., Hipwell, J. H., Tanner, C., Taylor, Z., Mertzanidou, T., Cardoso, J., Ourselin, S., Hawkes, D. J. (2012). Development of patient-specific biomechanical models for predicting large breast deformation. Phys Med Biol 57(2), 455-472 doi:10.1088/0031-9155/57/2/455. Author URL
Hoang Duc, A. K., Modat, M., Leung, K. K., Barnes, J., Fox, N. C., Kadir, T., Ourselin, S. (2012). Manifold learning for atlas selection in multi-atlas based segmentation of hippocampus. SPIE. ( pp.8314-8334).
Kazantsev, D., Arridge, S. R., Pedemonte, S., Bousse, A., Erlandsson, K., Hutton, B. F., Ourselin, S. (2012). An anatomically driven anisotropic diffusion filtering method for 3D SPECT reconstruction. Phys Med Biol 57(12), 3793-3810 doi:10.1088/0031-9155/57/12/3793. Author URL
Keihaninejad, S., Ryan, N., Malone, I. B., Modat, M., Cash, D. M., Ridgway, G., Zhang, H., Fox, N., Ourselin, S. (2012). The importance of group-wise registration in tract based spatial statistics study of neurodegeneration: a simulation study in Alzheimer's disease. PLoS One 7(11), e45996 doi:10.1371/journal.pone.0045996.
Leung, K. K., Ridgway, G. R., Ourselin, S., Fox, N. C., Alzheimer's Disease Neuroimaging Initiative, (2012). Consistent multi-time-point brain atrophy estimation from the boundary shift integral. Neuroimage 59(4), 3995-4005 doi:10.1016/j.neuroimage.2011.10.068. Author URL
Macdonald, K. E., Bartlett, J. W., Leung, K. K., Ourselin, S., Barnes, J. (2012). The Value of Hippocampal and Temporal Horn Volumes and Rates of Change in Predicting Future Conversion to AD. Alzheimer Dis Assoc Disord
Ma, D., Cardoso, M., Modat, M., Powell, N., Holmes, H., Lythgoe, M., Ourselin, S. (2012). Multi Atlas Segmentation applied to in vivo mouse brain MRI. MICCAI 2012 Workshop on Multi-Atlas Labeling. ( pp.134-143). Nice MICCAI 2012 Workshop on Multi-Atlas Labeling. Publisher URL
Melbourne, A., Kendall, G. S., Cardoso, M. J., Gunney, R., Robertson, N. J., Marlow, N., Ourselin, S. (2012). Radial structure in the preterm cortex; persistence of the preterm phenotype at term equivalent age? Med Image Comput Comput Assist Interv. ( Vol. 15 pp.256-263). Author URL
Melbourne, A., Tanner, C., Modat, M., Hawkes, D. J., Ourselin, S., Cahill, N. (2012). Using fractional gradient information in non-rigid image registration: Application to breast MRI. Progress in Biomedical Optics and Imaging - Proceedings of SPIE 8314 doi:10.1117/12.911173.
Mertzanidou, T., Hipwell, J., Cardoso, M. J., Zhang, X., Tanner, C., Ourselin, S., Bick, U., Huisman, H., Karssemeijer, N., Hawkes, D. (2012). MRI to X-ray mammography registration using a volume-preserving affine transformation. Med Image Anal 16(5), 966-975 doi:10.1016/j.media.2012.03.001. Author URL
Modat, M., Cardoso, M. J., Daga, P., Cash, D. M., Fox, N. C., Ourselin, S. (2012). Inverse-consistent symmetric free form deformation. WBIR. ( Vol. 7359 pp.79-88). Springer. Publisher URL
Pedemonte, S., Arridge, S., Hutton, B. F., Ourselin, S. (2012). Joint Estimation of the Activity and the Events of Interaction in SPECT Systems. 2012 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE RECORD (NSS/MIC). ( pp.3397-3400). Author URL
Pedemonte, S., Cardoso, M. J., Arridge, S. R., Hutton, B. F., Ourselin, S. (2012). Steady-state model of the radio-pharmaceutical uptake for MR-PET. MICCAI (1). ( Vol. 7510 pp.289-297). Springer. Publisher URL
Rohrer, J. D., Clarkson, M. J., Kittus, R., Rossor, M. N., Ourselin, S., Warren, J. D., Fox, N. C. (2012). Rates of hemispheric and lobar atrophy in the language variants of frontotemporal lobar degeneration. J Alzheimers Dis 30(2), 407-411 doi:10.3233/JAD-2012-111556. Author URL
Roth, H., McClelland, J., Modat, M., Hampshire, T., Boone, D., Hu, M., Ourselin, S., Halligan, S., Hawkes, D. (2012). Inverse-Consistent Symmetric Registration of Inner Colon Surfaces Derived From Prone and Supine CT Colonography. MEDICAL PHYSICS. ( Vol. 39 pp.3959-3960). Author URL
Shi, W., Zhuang, X., Wang, H., Duckett, S., Luong, D. V., Tobon-Gomez, C., Tung, K., Edwards, P. J., Rhode, K. S., Razavi, R. S., Ourselin, S., Rueckert, D. (2012). A Comprehensive Cardiac Motion Estimation Framework Using Both Untagged and 3-D Tagged MR Images Based on Nonrigid Registration. IEEE Trans Med Imaging 31(6), 1263-1275 doi:10.1109/TMI.2012.2188104. Author URL
Thomas, B. A., Erlandsson, K., Reilhac, A., Bousse, A., Kazantsev, D., Pedemonte, S., Vunckx, K., Arridge, S., Ourselin, S., Hutton, B. F. (2012). A Comparison of the Options for Brain Partial Volume Correction Using PET/MRI. 2012 IEEE NUCLEAR SCIENCE SYMPOSIUM AND MEDICAL IMAGING CONFERENCE RECORD (NSS/MIC). ( pp.2902-2906). Author URL
Vonach, M., Marson, B., Yun, M., Cardoso, J., Modat, M., Ourselin, S., Holder, D. (2012). A method for rapid production of subject specific finite element meshes for electrical impedance tomography of the human head. Physiol Meas 33(5), 801-816 doi:10.1088/0967-3334/33/5/801. Author URL
Young, J., Modat, M., Cardoso, M. J., Ashburner, J., Ourselin, S. (2012). Classification of Alzheimer's disease patients and controls with Gaussian processes. ISBI. ( pp.1523-1526). IEEE. Publisher URL
Young, J., Ridgway, G. R., Leung, K. K., Ourselin, S. (2012). Classification of Alzheimer's disease patients with hippocampal shape, wrapper based feature selection and support vector machine. SPIE. ( pp.8314-8325).
Zuluaga, M. A., Cardoso, M. J., Ourselin, S. (2012). Automatic right ventricle segmentation using multi-label fusion in cardiac MRI. Medical Image Computing and Computer-Assisted Intervention, Workshop on RV Segmentation Challenge in Cardiac MRI.

2011

Allain, B., Hu, M., Lovat, L. B., Cook, R. J., Vercautran, T., Ourselin, S., Hawkes, D. J. (2011). Re-localisation of a biopsy site in endoscopic images and characterisation of its uncertainty. Medical Image Analysis [Accepted]
Cardoso, M. J., Clarkson, M. J., Modat, M., Ourselin, S. (2011). Longitudinal cortical thickness estimation using Khalimsky's cubic complex. Med Image Comput Comput Assist Interv. ( Vol. 14 pp.467-475). Author URL
Cardoso, M. J., Clarkson, M. J., Modat, M., Ourselin, S. (2011). NiftySeg. http://sourceforge.net/projects/niftyseg/.
Cardoso, M. J., Clarkson, M. J., Modat, M., Ourselin, S. (2011). On the extraction of topologically correct thickness measurements using Khalimsky's cubic complex. Lecture Notes in Computer Science. ( Vol. 6801 LNCS pp.159-170).
Cardoso, M. J., Clarkson, M. J., Modat, M., Ourselin, S., Talbot, H., Couprie, M. (2011). Topologically Correct Cortical Segmentation using Khalimsky's Cubic Complex framework. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. ( Vol. 7962 ).
Cardoso, M. J., Clarkson, M. J., Ridgway, G. R., Modat, M., Fox, N. C., Ourselin, S., Alzheimer's Disease Neuroimaging Initiative, (2011). LoAd: A locally adaptive cortical segmentation algorithm. Neuroimage 56(3), 1386-1397 doi:10.1016/j.neuroimage.2011.02.013. Author URL
Cardoso, M. J., Melbourne, A., Kendall, G. S., Modat, M., Hagmann, C. F., Robertson, N. J., Marlow, N., Ourselin, S. (2011). Adaptive neonate brain segmentation. Med Image Comput Comput Assist Interv. ( Vol. 14 pp.378-386). Author URL
Clarkson, M. J., Cardoso, M. J., Modat, M., Ridgway, G. R., Leung, K. K., Rohrer, J. D., Ourselin, S., Fox, N. (2011). A Comparative Study of Voxel and Surface Based Cortical Thickness Methods in Frontotemporal Dementia. Alzheimer's Association International Conference (AAIC) Alzheimer's Imaging Consortium. Author URL
Clarkson, M. J., Cardoso, M. J., Ridgway, G. R., Modat, M., Leung, K. K., Rohrer, J. D., Fox, N. C., Ourselin, S. (2011). A comparison of voxel and surface based cortical thickness estimation methods. NeuroImage 57(3), 856-865 doi:10.1016/j.neuroimage.2011.05.053. Publisher URL
Clarkson, M. J., Cardoso, M., Modat, M., Ridgway, G. R., Leung, K. K., Rohrer, J., Fox, N. C., Ourselin, S. (2011). Cross-sectional analysis using voxel or surface based cortical thickness methods: A comparison study. 2011 8th IEEE International Symposium on Biomedical Imaging: From Nano to Macro: Proceedings: March 30 – April 2, 2011 Chicago, Illinois, USA. ( pp.381-384). Piscataway, US IEEE. Publisher URL
Cleary, J. O., Modat, M., Norris, F. C., Price, A. N., Jayakody, S. A., Martinez-Barbera, J. P., Greene, N. D., Hawkes, D. J., Ordidge, R. J., Scambler, P. J., Ourselin, S., Lythgoe, M. F. (2011). Magnetic resonance virtual histology for embryos: 3D atlases for automated high-throughput phenotyping. Neuroimage 54(2), 769-778 doi:10.1016/j.neuroimage.2010.07.039. Author URL
Daga, P., Modat, M., Cardoso, M. J., Hawkes, D., Ourselin, S., Winston, G., Duncan, J. S., White, M., Mancini, L., McEvoy, A. W., Thornton, J., Micallef, C., Yousry, T. (2011). Improved neuronavigation through integration of intraoperative anatomical and diffusion images in an interventional MRI suite. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 6689 LNCS, 168-178 doi:10.1007/978-3-642-21504-9_16.
Daga, P., Winston, G., Modat, M., Cardoso, M. J., Stretton, J., Symms, M., McEvoy, A. W., Hawkes, D., Duncan, J., Ourselin, S. (2011). Integrating structural and diffusion MR information for optic radiation localisation in focal epilepsy patients. Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on. ( pp.353-356). Publisher URL
Daga, P., Winston, G., Modat, M., White, M., Mancini, L., Cardoso, M., Symms, M., Hawkes, D., Duncan, J., Ourselin, S. (2011). Accurate localization of optic radiation during neurosurgery in an interventional MRI suite. IEEE Trans Med Imaging doi:10.1109/TMI.2011.2179668.
Fonteijn, H. M., Clarkson, M. J., Modat, M., Barnes, J., Lehmann, M., Ourselin, S., Fox, N. C., Alexander, D. C. (2011). An event-based disease progression model and its application to familial Alzheimer's disease. Lecture Notes in Computer Science. ( Vol. 6801 LNCS pp.748-759).
Kazantsev, D., Pedemonte, S., Arridge, S. R., Ourselin, S., Bousse, A., Hutton, B. F. (2011). Edge preserving bowsher prior with nonlocal weighting for 3D spect reconstruction. Proceedings - International Symposium on Biomedical Imaging , 1158-1161 doi:10.1109/ISBI.2011.5872607.
Lehmann, M., Rohrer, J. D., Clarkson, M. J., Ridgway, G. R., Scahill, R. I., Warren, J. D., Ourselin, S., Barnes, J., Rossor, M. N., Fox, N. C., Modat, M. (2011). Patterns of cortical thickness in pathologically-confirmed typical and atypical Alzheimer's disease. ( Vol. 2 pp.57-67).
Leung, K. K., Barnes, J., Modat, M., Ridgway, G. R., Bartlett, J., Fox, N. C., Ourselin, S. (2011). Automated brain extraction using Multi-Atlas Propagation and Segmentation (MAPS). The eighth IEEE International Symposium on Biomedical Imaging (ISBI 2011). Publisher URL
Leung, K. K., Barnes, J., Modat, M., Ridgway, G. R., Bartlett, J. W., Fox, N. C., Ourselin, S. (2011). Brain MAPS: An automated, accurate and robust brain extraction technique using a template library. NeuroImage 55(3), 1091-1108
Leung, K. K., Barnes, J., Modat, M., Ridgway, G. R., Bartlett, J. W., Fox, N. C., Ourselin, S., Alzheimer's Disease Neuroimaging Initiative, (2011). Brain MAPS: An automated, accurate and robust brain extraction technique using a template library. Neuroimage 55(3), 1091-1108 doi:10.1016/j.neuroimage.2010.12.067. Author URL
Leung, K. K., Ridgway, G. R., Clarkson, M. J., Nielsen, C., Ourselin, S., Fox, N. (2011). Automated and consistent brain atrophy estimation using boundary shift integral in longitudinal MRI study. Alzheimer's Association International Conference (AAIC): Alzheimer's Imaging Consortium. Author URL
Leung, K. K., Ridgway, G. R., Ourselin, S., Fox, N. C. (2011). Consistent multi-time-point brain atrophy estimation from the boundary shift integral. NeuroImage (0) doi:10.1016/j.neuroimage.2011.10.068. Author URL
Leung, K. K., Ridgway, G. R., Ourselin, S., Fox, N. C. (2011). Consistent multi-time-point brain atrophy estimation from the boundary shift integral. Neuroimage [Accepted]
McClelland, J. R., Hughes, S., Modat, M., Qureshi, A., Ahmad, S., Landau, D. B., Ourselin, S., Hawkes, D. J. (2011). Inter-fraction variations in respiratory motion models. Phys Med Biol 56(1), 251-272 doi:10.1088/0031-9155/56/1/015. Author URL
Melbourne, A., Hipwell, J., Modat, M., Mertzanidou, T., Huisman, H., Ourselin, S., Hawkes, D. J. (2011). The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI. Physics in Medicine and Biology 56(24), 7693-7708
Melbourne, A., Hipwell, J., Modat, M., Mertzanidou, T., Huisman, H., Ourselin, S., Hawkes, D. J. (2011). The effect of motion correction on pharmacokinetic parameter estimation in dynamic-contrast-enhanced MRI. Phys Med Biol 56(24), 7693-7708 doi:10.1088/0031-9155/56/24/001. Author URL
Modat, M., Daga, P., Cardoso, M. J., Hawkes, D. J., Ourselin, S., Ridgway, G. R., Ashburner, J. (2011). Log-Euclidean free-form deformation. Progress in Biomedical Optics and Imaging - Proceedings of SPIE. ( Vol. 7962 ).
Murphy, K., van Ginneken, B., Reinhardt, J. M., Kabus, S., Ding, K., Deng, X., Cao, K., Du, K., Christensen, G. E., Garcia, V., Vercauteren, T., Ayache, N., Commowick, O., Malandain, G., Glocker, B., Paragios, N., Navab, N., Gorbunova, V., Sporring, J., de Bruijne, M., Han, X., Heinrich, M. P., Schnabel, J. A., Jenkinson, M., Lorenz, C., Modat, M., McClelland, J. R., Ourselin, S., Muenzing, S. E., Viergever, M. A., De Nigris, D., Collins, D. L., Arbel, T., Peroni, M., Li, R., Sharp, G. C., Schmidt-Richberg, A., Ehrhardt, J., Werner, R., Smeets, D., Loeckx, D., Song, G., Tustison, N., Avants, B., Gee, J. C., Staring, M., Klein, S., Stoel, B. C., Urschler, M., Werlberger, M., Vandemeulebroucke, J., Rit, S., Sarrut, D., Pluim, J. P. (2011). Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge. IEEE Trans Med Imaging 30(11), 1901-1920 doi:10.1109/TMI.2011.2158349.
Norris, F. C., Cleary, J. O., Modat, M., Sinclair, B., Mccue, K., Wells, J. A., Martinez-Barbera, J. P., Brander, S., Fisher, E., Scambler, P. J., Ourselin, S., Lythgoe, M. F. (2011). Mouse phenotyping using high resolution 3D microscopic magnetic resonance imaging. GENETICS RESEARCH. ( Vol. 93 pp.440-440). Author URL
Pedemonte, S., Arridge, S., Ourselin, S., Bousse, A., Hutton, B. F. (2011). Probabilistic graphical model of SPECT/MRI. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 7009 LNCS, 167-174 doi:10.1007/978-3-642-24319-6_21.
Pedemonte, S., Bousse, A., Hutton, B. F., Arridge, S., Ourselin, S. (2011). 4-D generative model for PET/MRI reconstruction. Med Image Comput Comput Assist Interv. ( Vol. 14 pp.581-588). Author URL
Ridgway, G. R., Lehmann, M., Rohrer, J., Clarkson, M., Warren, J., Ourselin, S., Fox, N. (2011). Balanced sensitivity and specificity on unbalanced data using support vector machine re-thresholding. AAICAD Alzheimer's Imaging Consortium. Author URL
Rohrer, J. D., Lashley, T., Schott, J. M., Warren, J. E., Mead, S., Isaacs, A. M., Beck, J., Hardy, J., de Silva, R., Warrington, E., Troakes, C., Al-Sarraj, S., King, A., Borroni, B., Clarkson, M., Ourselin, S., Holton, J., Fox, N. C., Revesz, T., Rossor, M. N., Warren, J. D. (2011). Clinical and neuroanatomical signatures of tissue pathology in frontotemporal lobar degeneration. Brain 134(9), 2565-2581
Roth, H. R., McClelland, J. R., Boone, D. J., Modat, M., Cardoso, M. J., Hampshire, T. E., Hu, M., Punwani, S., Ourselin, S., Slabaugh, G. G., Halligan, S., Hawkes, D. J. (2011). Registration of the endoluminal surfaces of the colon derived from prone and supine CT colonography. Medical Physics 38(6), 3077-3089 doi:10.1118/1.3577603. Publisher URL
Shi, W., Zhuang, X., Wang, H., Duckett, S. G., O'Regan, D. P., Edwards, P. J., Ourselin, S., Rueckert, D. (2011). Automatic Segmentation of Different Pathologies from Cardiac Cine MRI Using Registration and Multiple Component EM Estimation. FIMH. ( Vol. 6666 pp.163-170). Springer. Publisher URL
Shi, W., Zhuang, X., Wolz, R., Duckett, S. G., Tung, K. -. P., Wang, H., Ourselin, S., Edwards, P. J., Razavi, R., Rueckert, D. (2011). A Multi-image Graph Cut Approach for Cardiac Image Segmentation and Uncertainty Estimation. STACOM. ( Vol. 7085 pp.178-187). Springer. Publisher URL
SIOW, B., Cleary, J. O., Greene, N. D., Daga, P., Modat, M., Ordidge, R., Ourselin, S., Alexander, D. A., Lythgoe, M. F. (2011). Mouse Embryo Phenotyping with Contrast-enhanced micro-Diffusion Tensor Imaging. 19th meeting of the International Society for Magnetic Resonance in Medicine.
Taylor, Z. A., Crozier, S., Ourselin, S. (2011). A Reduced Order Explicit Dynamic Finite Element Algorithm for Surgical Simulation. IEEE Trans Med Imaging 30(9), 1713-1721 doi:10.1109/TMI.2011.2143723.
Thomas, B. A., Erlandsson, K., Modat, M., Thurfjell, L., Vandenberghe, R., Ourselin, S., Hutton, B. F. (2011). The importance of appropriate partial volume correction for PET quantification in Alzheimer's disease. Eur J Nucl Med Mol Imaging 38(6), 1104-1119 doi:10.1007/s00259-011-1745-9.
Thomas, B. A., Erlandsson, K., Thurfjell, L., Ourselin, S., Hutton, B. F. (2011). An improved iterative MR-based partial volume correction technique for brain PET quantification. EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING. ( Vol. 38 pp.S132-S132). Author URL
Thomas, B. A., Erlandsson, K., Thurfjell, L., Vandenberghe, R., Ourselin, S., Hutton, B. F. (2011). White matter variability for two amyloid brain PET tracers: implications for partial volume correction. EUROPEAN JOURNAL OF NUCLEAR MEDICINE AND MOLECULAR IMAGING. ( Vol. 38 pp.S108-S108). Author URL
Wang, H., Shi, W., Zhuang, X., Duckett, S. G., Tung, K. -. P., Edwards, P. J., Razavi, R., Ourselin, S., Rueckert, D. (2011). Automatic Cardiac Motion Tracking Using Both Untagged and 3D Tagged MR Images. STACOM. ( Vol. 7085 pp.45-54). Springer. Publisher URL
Winston, G. P., Daga, P., Stretton, J., Modat, M., Symms, M. R., McEvoy, A. W., Ourselin, S., Duncan, J. S. (2011). Developing optic radiation tractography to reduce visual field deficits following anterior temporal lobe resection. JOURNAL OF NEUROLOGY. ( Vol. 258 pp.54-54). SPRINGER HEIDELBERG.
Winston, G. P., Daga, P., Stretton, J., Modat, M., Symms, M. R., McEvoy, A. W., Ourselin, S., Duncan, J. S. (2011). Optic radiation tractography and vision in anterior temporal lobe resection. Annals of Neurology doi:10.1002/ana.22619. [Accepted]
Zhang, D. P., Zhuang, X. H., Ourselin, S., Rueckert, D. (2011). Motion tracking of left ventricle and coronaries in 4D CTA. MEDICAL IMAGING 2011: IMAGE PROCESSING. ( Vol. 7962 ). SPIE-INT SOC OPTICAL ENGINEERING.
Zhuang, X., Arridge, S., Hawkes, D. J., Ourselin, S. (2011). A Nonrigid Registration Framework Using Spatially Encoded Mutual Information and Free-Form Deformations. IEEE Trans Med Imaging 30(10), 1819-1828 doi:10.1109/TMI.2011.2150240.
Zhuang, X., Shi, W., Duckett, S. G., Wang, H., Razavi, R., Hawkes, D. J., Rueckert, D., Ourselin, S. (2011). A Framework Combining Multi-sequence MRI for Fully Automated Quantitative Analysis of Cardiac Global And Regional Functions. FIMH. ( Vol. 6666 pp.367-374). Springer. Publisher URL

2010

Allain, B., Hu, M., Lovat, L. B., Cook, R. J., Vercauteren, T., Ourselin, S., Hawkes, D. J. (2010). A System for Biopsy Site Re-targeting with Uncertainty in Gastroenterology and Oropharyngeal Examinations. Med Image Comput Comput Assist Interv 13(Pt 2), 514-521 Author URL
Archer, H. A., Kennedy, J., Barnes, J., Pepple, T., Boyes, R., Randlesome, K., Clegg, S., Leung, K. K., Ourselin, S., Frost, C., Rossor, M. N., Fox, N. C. (2010). Memory complaints and increased rates of brain atrophy: risk factors for mild cognitive impairment and Alzheimer's disease. International Journal of Geriatric Psychiatry 25(11), 1119-1126 doi:10.1002/gps.2440. Author URL
Barnes, J., Ridgway, G. R., Bartlett, J., Henley, S. M., Lehmann, M., Hobbs, N., Clarkson, M. J., MacManus, D. G., Ourselin, S., Fox, N. C. (2010). Head size, age and gender adjustment in MRI studies: a necessary nuisance? Neuroimage 53(4), 1244-1255 doi:10.1016/j.neuroimage.2010.06.025.
Bourgeat, P., Chételat, G., Villemagne, V. L., Fripp, J., Raniga,, P,, Pike,, K,, Acosta,, O,, Szoeke,, C,, Ourselin,, S,, Ames,, D,, Ellis,, KA,, Martins,, RN,, Masters,, CL,, Rowe,, CC, S., O, (2010). beta-Amyloid burden in the temporal neocortex is related to hippocampal atrophy in elderly subjects without dementia. Neurology 74(2), 121-127 Author URL
Bousse, A., Erlandsson, K., Hutton, B. F., Pedemonte, S., Kazantsev, D., Ourselin, S., Arridge, S. (2010). Weighted MRI-Based bowsher priors for SPECT brain image reconstruction. IEEE Nuclear Science Symposium Conference Record , 3519-3522 doi:10.1109/NSSMIC.2010.5874462.
Bousse, A., Fuin, N., Erlandsson, K., Hutton, B. F., Pedemonte, S., Kazantsev, D., Ourselin, S., Arridge, S. (2010). Point spread function optimization in SPECT. IEEE Nuclear Science Symposium Conference Record , 2061-2065 doi:10.1109/NSSMIC.2010.5874139.
Cardoso, M. J., Clarkson, M. J., Modat, M., Ridgway, G. R., Ourselin, S. (2010). LOCALLY WEIGHTED MARKOV RANDOM FIELDS FOR CORTICAL SEGMENTATION. Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on. ( pp.956-959). Publisher URL
Clarkson, M. J., Malone, I. B., Modat, M., Leung, K. K., Ryan, N., Alexander, D. C., Fox, N. C., Ourselin, S. (2010). A Framework for Using Diffusion Weighted Imaging to Improve Cortical Parcellation. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010. ( Vol. 6361 pp.534-541). Springer.
Dowling, J., Lambert, J., Parker, J., Greer, P. B., Fripp, J., Denham, J., Ourselin, S., Salvado, O. (2010). Automatic MRI Atlas-Based External Beam Radiation Therapy Treatment Planning for Prostate Cancer. Prostate Cancer Imaging. ( Vol. 6367 pp.25-33). Springer. Publisher URL
Fripp, J., Crozier, S., Warfield, S. K., Ourselin, S. (2010). Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee. IEEE Trans Med Imaging 29(1), 55-64 doi:10.1109/TMI.2009.2024743.
Guitera, P., Bourgeat, P., Stretch, J. R., Scolyer, R. A., Ourselin, S., Lean, C., Thompson, J. F., Bourne, R. (2010). Diagnostic value of 8.5 T magnetic resonance spectroscopy of benign and malignant skin lesion biopsies. Melanoma Res 20(4), 311-317
Han, L., Hipwell, J. H., Taylor, Z. A., Tanner, C., Ourselin, S., Hawkes, D. J. (2010). Fast Deformation Simulation of Breasts Using GPU-Based Dynamic Explicit Finite Element Method. Digital Mammography / IWDM. ( Vol. 6136 pp.728-735). Springer. Publisher URL
Kazantsev, D., Pedemonte, S., Panagiotou, C., Arridge, S. R., Ourselin, S., Bousse, A., Hutton, B. F. (2010). ET Bayesian reconstruction using automatic bandwidth selection for joint entropy optimization. IEEE Nuclear Science Symposium Conference Record , 3301-3307 doi:10.1109/NSSMIC.2010.5874415.
Lee, B., Popescu, D. C., Ourselin, S. (2010). Topology modification for surgical simulation using precomputed finite element models based on linear elasticity. Prog Biophys Mol Biol 103(2-3), 236-251 doi:10.1016/j.pbiomolbio.2010.09.011.
Lehmann, M., Douiri, A., Kim, L. G., Modat, M., Chan, D., Ourselin, S., Barnes, J., Fox, N. C. (2010). Atrophy patterns in Alzheimer's disease and semantic dementia: A comparison of FreeSurfer and manual volumetric measurements. Neuroimage 49(3), 2264-2274 doi:10.1016/j.neuroimage.2009.10.056.
Lehmann, M., Rohrer, J. D., Clarkson, M. J., Ridgway, G. R., Scahill, R. I., Modat, M., Warren, J. D., Ourselin, S., Barnes, J., Rossor, M. N., Fox, N. C. (2010). Reduced Cortical Thickness in the Posterior Cingulate Gyrus is Characteristic of Both Typical and Atypical Alzheimer's Disease. J Alzheimer Dis 20(2), 587-598 doi:10.3233/JAD-2010-1401.
Leung, K. K., Barnes, J., Ridgway, G. R., Bartlett, J. W., Clarkson, M. J., Macdonald, K., Schuff, N., Fox, N. C., Ourselin, S. (2010). Automated cross-sectional and longitudinal hippocampal volume measurement in mild cognitive impairment and Alzheimer's disease. NeuroImage 51(4), 1345-1359 doi:10.1016/j.neuroimage.2010.03.018. Publisher URL
Leung, K. K., Clarkson, M. J., Bartlett, J. W., Clegg, S., Jack, C. R., Weiner, M. W., Fox, N. C., Ourselin, S., the, A. D. N. I. (2010). Robust atrophy rate measurement in Alzheimer's disease using multi-site serial MRI: Tissue-specific intensity normalization and parameter selection. Neuroimage 50(2), 516-523 doi:10.1016/j.neuroimage.2009.12.059. Author URL
Leung, K. K., Shen, K. -. K., Barnes, J., Ridgway, G. R., Clarkson, M. J., Fripp, J., Salvado, O., Meriaudeau, F., Fox, N. C., Bourgeat, P., Ourselin, S. (2010). Increasing Power to Predict Mild Cognitive Impairment Conversion to Alzheimer's Disease Using Hippocampal Atrophy Rate and Statistical Shape Models. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010. ( Vol. 6362 pp.125-132). Springer.
Mertzanidou, T., Hipwell, J. H., Cardoso, M. J., Tanner, C., Ourselin, S., Hawkes, D. J. (2010). X-ray Mammography - MRI Registration Using a Volume-Preserving Affine Transformation and an EM-MRF for Breast Tissue Classification. Digital Mammography / IWDM. ( Vol. 6136 pp.23-30). Springer. Publisher URL
Modat, M., Daga, P., Clarkson, M. J., Ourselin, S. (2010). NiftyReg. http://sourceforge.net/projects/niftyreg/.
Modat, M., Ridgway, G. R., Hawkes, D. J., Fox, N. C., Ourselin, S. (2010). NONRIGID REGISTRATION WITH DIFFERENTIAL BIAS CORRECTION USING NORMALISED MUTUAL INFORMATION. Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on. ( pp.356-359). Publisher URL
Modat, M., Ridgway, G. R., Taylor, Z. A., Lehmann, M., Barnes, J., Hawkes, D. J., Fox, N. C., Ourselin, S. (2010). Fast free-form deformation using graphics processing units. Comput Methods Programs Biomed 98(3), 278-284 doi:10.1016/j.cmpb.2009.09.002. Author URL
Modat, M., Taylor, Z., Ridgway, G., Barnes, J., Wild, E., Hawkes, D. J., Fox, N., Ourselin, S. (2010). Nonlinear Elastic Spline Registration: Evaluation with Longitudinal Huntington's Disease Data. LNCS. ( pp.128-139). Publisher URL
Norris, F. C., Cleary, J. O., Modat, M., Price, A. N., McCue, K., Beddow, S., Scambler, P. J., Ourselin, S., Lythgoe, M. F. (2010). Propagation-Based Morphometry in an Ex Vivo Mouse Embryo Atlas - Assessment and Validation. Proceedings 18th Scientific Meeting, International Society for Magnetic Resonance in Medicine, Stockholm.
Pedemonte, S., Modat, M., Arridge, S., Ourselin, S., Bousse, A., Erlandsson, K., Hutton, B. F. (2010). GPU accelerated rotation-based emission tomography reconstruction. IEEE Nuclear Science Symposium Conference Record , 2657-2661 doi:10.1109/NSSMIC.2010.5874272.
Pedemonte, S., Ourselin, S. (2010). NiftyRec. http://sourceforge.net/projects/niftyrec/.
Rohrer, J. D., Ridgway, G. R., Crutch, S. J., Hailstone, J., Goll, J. C., Clarkson, M. J., Mead, S., Beck, J., Mummery, C., Ourselin, S., Warrington, E. K., Rossor, M. N., Warren, J. D. (2010). Progressive logopenic/phonological aphasia: Erosion of the language network. Neuroimage 49(1), 984-993 doi:10.1016/j.neuroimage.2009.08.002. Author URL
Rohrer, J. D., Ridgway, G. R., Modat, M., Ourselin, S., Mead, S., Fox, N. C., Rossor, M. N., Warren, J. D. (2010). Distinct profiles of brain atrophy in frontotemporal lobar degeneration caused by progranulin and tau mutations. Neuroimage doi:10.1016/j.neuroimage.2009.12.088. Author URL
Roth, H., McClelland, J., Boone, D., Hu, M., Ourselin, S., Slabaugh, G., Halligan, S., Hawkes, D., Medicsight, P. L. C. (2010). Conformal Mapping of the Inner Colon Surface to a Cylinder for the Application of Prone to Supine Registration. Medical Image Understanding and Analysis (MIUA).
Roth, H., McClelland, J., Modat, M., Boone, D., Hu, M., Ourselin, S., Slabaugh, G., Halligan, S., Hawkes, D. (2010). Establishing Spatial Correspondence between the Inner Colon Surfaces from Prone and Supine CT Colonography. Med Image Comput Comput Assist Interv. ( Vol. 13 pp.497-504). Author URL
Ryan, N. S., Malone, I., Lehmann, M., Crutch, S., Ourselin, S., Ciccarelli, O., Fox, N. C. (2010). Patterns of white matter tract degeneration and grey matter loss in posterior cortical atrophy and typical amnestic presentations of Alzheimer's disease. EUROPEAN JOURNAL OF NEUROLOGY. ( Vol. 17 pp.60-60). WILEY-BLACKWELL.
Ryan, N. S., Okello, A., Knight, W. D., Lehmann, M., Malone, I., Clarkson, M., Bartlett, J., Ridgway, G., Mancini, L., Thornton, J., Ourselin, S., Brooks, D., Rossor, M., Fox, N. (2010). Early subcortical amyloid deposition in familial Alzheimer's disease is accompanied by changes in tissue volume and diffusivity. Alzheimer's Association International Conference. Alzheimer's & dementia : the journal of the Alzheimer's Association Elsevier, Inc.. Publisher URL
Schott, J. M., Bartlett, J. W., Barnes, J., Leung, K. K., Ourselin, S., Fox, N. C. (2010). Reduced sample sizes for atrophy outcomes in Alzheimer's disease trials: baseline adjustment. Neurobiol Aging 31(8), 1452-1462.e2 Author URL
Taylor, Z. A., Crozier, S., Ourselin, S. (2010). Real-Time Surgical Simulation Using Reduced Order Finite Element Analysis. Med Image Comput Comput Assist Interv. ( Vol. 13 pp.388-395). Author URL
Taylor, Z. A., Johnsen, S., Ourselin, S. (2010). NiftySim. http://sourceforge.net/projects/niftysim/.
Taylor, Z. A., Ourselin, S., Crozier, S. (2010). A Reduced Order Finite Element Algorithm for Surgical Simulation. Conf Proc IEEE Eng Med Biol Soc. ( Vol. 2010 pp.239-242). Author URL
Visser, H. D., Passenger, J., Conlan, D., Russ, C., Hellier, D., Cheng, M., Acosta, O., Ourselin, S., Salvado, O. (2010). DEVELOPING A NEXT GENERATION COLONOSCOPY SIMULATOR. Int. J. Image Graphics 10, 203-217, 2 doi:10.1142/S0219467810003731.
Yang, G., Hipwell, J. H., Clarkson, M. J., Tanner, C., Mertzanidou, T., Gunn, S., Ourselin, S., Hawkes, D. J., Arridge, S. R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis. Digital Mammography / IWDM. ( Vol. 6136 pp.760-768). Springer. Publisher URL
Yang, G., Hipwell, J. H., Clarkson, M. J., Tanner, C., Mertzanidou, T., Gunn, S., Ourselin, S., Hawkes, D. J., Arridge, S. R. (2010). Combined Reconstruction and Registration of Digital Breast Tomosynthesis: Sequential Method versus Iterative Method. Proceedings of Medical Image Understanding and Analysis 2010. ( pp.P27-1-P27-5). Warwick, UK Department of Computer Science, University of Warwick. Publisher URL
Zhuang, X., Hawkes, D. J., Ourselin, S. (2010). Spatial Information Encoded Mutual Information for Nonrigid Registration. WBIR. ( Vol. 6204 pp.246-257). Springer. Publisher URL
Zhuang, X., Leung, K., Rhode, K., Razavi, R., Hawkes, D., Ourselin, S. (2010). Whole Heart Segmentation of Cardiac MRI Using Multiple Path Propagation Strategy. Med Image Comput Comput Assist Interv. ( Vol. 13 pp.435-443). Author URL
Zhuang, X., Rhode, K. S., Razavi, R. S., Hawkes, D. J., Ourselin, S. (2010). A Registration-Based Propagation Framework for Automatic Whole Heart Segmentation of Cardiac MRI. IEEE Trans Med Imaging 29(9), 1612-1625 doi:10.1109/TMI.2010.2047112.
Zhuang, X., Yao, C., Ma, Y., Hawkes, D. J., Penney, G. P., Ourselin, S. (2010). REGISTRATION-BASED PROPAGATION FOR WHOLE HEART SEGMENTATION FROM COMPOUNDED 3D ECHOCARDIOGRAPHY. ISBI. ( pp.1093-1096). IEEE. Publisher URL

2009

Acosta, O., Bourgeat, P., Zuluaga, M. A., Fripp, J., Salvado, O., Ourselin, S., Alzheimer's Disease Neuroimaging I, (2009). Automated voxel-based 3D cortical thickness measurement in a combined Lagrangian-Eulerian PDE approach using partial volume maps. Medical Image Analysis 13(5), 730-743 doi:10.1016/j.media.2009.07.003.
Allain, B., Hu, M. X., Lovat, L. B., Ourselin, S., Cook, R., Hawkes, D. J. (2009). Biopsy Site Re-localisation Based on the Computation of Epipolar Lines from Two Previous Endoscopic Images. MICCAI. ( Vol. 5761 pp.491-498). Heidelberg Springer.
Allain, B., Price, A., Vercauteren, T. K., Cook, R. J., Ourselin, S., Lythgoe, M. F., Hawkes, D. J. (2009). Precision of Confocal Miniprobe Localisation Assessed By High-Field Magnetic Resonance Imaging. GASTROINTESTINAL ENDOSCOPY. ( Vol. 69 pp.AB370-AB370). MOSBY-ELSEVIER.
Barnes, J., Ourselin, S., Fox, N. C. (2009). Clinical Application of Measurement of Hippocampal Atrophy in Degenerative Dementias. Hippocampus 19(6), 510-516 doi:10.1002/hipo.20617. Author URL
Cardoso, M. J., Clarkson, M. J., Ridgway, G. R., Modat, M., Fox, N. C., Ourselin, S. (2009). Improved Maximum a Posteriori Cortical Segmentation by Iterative Relaxation of Priors. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2009, PT II, PROCEEDINGS. ( Vol. 5762 pp.439-447). SPRINGER-VERLAG BERLIN.
Cheng, M., Passenger, J., Salvado, O., Riek, S., Ourselin, S., Watson, M. (2009). Pneumatic Haptic Interface Fuzzy Controller for Simulation of Abdominal Palpations During Colonoscopy. WORLD HAPTICS 2009: THIRD JOINT EUROHAPTICS CONFERENCE AND SYMPOSIUM ON HAPTIC INTERFACES FOR VIRTUAL ENVIRONMENT AND TELEOPERATOR SYSTEMS, PROCEEDINGS. ( pp.250-255). IEEE.
Clarkson, M. J., Nielsen, C., Leung, K. K., Barnes, J., Whitwell, J. L., Gunter, J., Jack, C., Fox, N. C., Ourselin, S., The, A. D. N. I. A. D. N. I. (2009). Correction of MRI Scaling Parameters: A comparison of phantom and registration methods on the ADNI dataset. ISMRM.
Clarkson, M. J., Ourselin, S., Nielsen, C., Leung, K. K., Barnes, J., Whitwell, J. L., Gunter, J. L., Hill, D. L. G., Weiner, M. W., Jack, C. R., Fox, N. C., The, A. D. N. I. (2009). Comparison of phantom and registration scaling corrections using the ADNI cohort. NeuroImage 47(4), 1506-1513 doi:10.1016/j.neuroimage.2009.05.045. Author URL
Cleary, J. O., Modat, M., Price, A. N., NDE, G., Thomas, D. L., Scambler, P. J., Hawkes, D. J., Ordidge, R. J., Ourselin, S., Lythgoe, M. F. (2009). Phenotyping in the Mouse Embryo using a microMRI atlas. ISMRM. ( pp.825-825).
Evans, M. C., Barnes, J., Nielsen, C., Kim, L. G., Clegg, S. L., Blair, M., Leung, K. K., Douiri, A., Boyes, R. G., Ourselin, S., Fox, N. C. (2009). Volume changes in Alzheimer's disease and mild cognitive impairment: cognitive associations. European Radiology 20(3), 674-682 Author URL
Fripp, J., Bourgeat, P., Engstrom, C., Ourselin, S., Crozier, S., Salvado, O. (2009). AUTOMATED SEGMENTATION OF THE MENISCI FROM MR IMAGES. 2009 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1 AND 2. ( pp.510-513). IEEE.
Gutiérrez-Galve, L., Lehmann, M., Hobbs, N. Z., Clarkson, M. J., Ridgway, G. R., Crutch, S., Ourselin, S., Schott, J. M., Fox, N. C., Barnes, J. (2009). Patterns of Cortical Thickness according to APOE Genotype in Alzheimer's Disease. Dement Geriatr Cogn Disord 28(5), 476-485 doi:10.1159/000258100. Author URL
Leung, K. K., Clarkson, M. J., Fox, N. C., Ourselin, S. (2009). Robust intensity normalisation and automatic intensity window selection for the calculation of the boundary shift integral. ISMRM.
Ridgway, G. R., Omar, R., Ourselin, S., Hill, D. L. G., Warren, J. D., Fox, N. C. (2009). Issues with threshold masking in voxel-based morphometry of atrophied brains. NeuroImage 44(1), 99-111 doi:10.1016/j.neuroimage.2008.08.045. Author URL
Rohrer, J. D., Warren, J. D., Modat, M., Ridgway, G. R., Douiri, A., Rossor, M. N., Ourselin, S., Fox, N. C. (2009). Patterns of cortical thinning in the language variants of frontotemporal lobar degeneration. Neurology 72(18), 1562-1569 doi:10.1212/WNL.0b013e3181a4124e. Author URL
Taylor, Z. A., Comas, O., Cheng, M., Passenger, J., Hawkes, D. J., Atkinson, D., Ourselin, S. (2009). On modelling of anisotropic viscoelasticity for soft tissue simulation: Numerical solution and GPU execution. Medical Image Analysis 13(2), 234-244 doi:10.1016/j.media.2008.10.001. Author URL
Thomas, B., Erlandsson, K., Ourselin, S., Thurfjell, L., Hutton, B. (2009). A brain phantom study of iterative deconvolution versus anatomical-based partial-volume correction techniques. JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM. ( Vol. 29 pp.S342-S342). NATURE PUBLISHING GROUP.
Thomas, B., Thurfjell, L., Rinne, J., Ourselin, S., Hutton, B. (2009). The effects of iterative deconvolution partial-volume correction on beta-amyloid PET. JOURNAL OF CEREBRAL BLOOD FLOW AND METABOLISM. ( Vol. 29 pp.S337-S338). NATURE PUBLISHING GROUP.
Zhuang, X., Hawkes, D. J., Ourselin, S. (2009). Unifying Encoding of Spatial Information in Mutual Information for Nonrigid Registration. Lecture Notes in Computer Science (LNCS). ( Vol. 5636 pp.491-502).
Zhuang, X., Rhode, K., Razavi, R., Hawkes, D. J., Ourselin, S. (2009). Free-Form Deformations Using Adaptive Control Point Status for Whole Heart MR Segmentation. Lecture Notes in Computer Science (LNCS). ( Vol. 5528 pp.303-311). Author URL

2008

Acosta, O., Bourgeat, P., Fripp, J., Bonner, E., Ourselin, S., Salvado, O. (2008). Automatic Delineation of Sulci and Improved Partial Volume Classification for Accurate 3D Voxel-Based Cortical Thickness Estimation from MR. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2008, PT I, PROCEEDINGS. ( Vol. 5241 pp.253-261). SPRINGER-VERLAG BERLIN.
Acosta, O., Frimmel, H., Fenster, A., Salvado, O., Ourselin, S. (2008). Pyramidal flux in an anisotropic diffusion scheme for enhancing structures in 3D images - art. no. 691429. MEDICAL IMAGING 2008: IMAGE PROCESSING, PTS 1-3. ( Vol. 6914 pp.91429-91429). SPIE-INT SOC OPTICAL ENGINEERING.
Atkinson, D., Hansen, M. S., Modat, M., Ourselin, S., Sørensen, T. S., Taylor, Z. (2008). Commodity Graphics Cards for Image Registration, Biomechanical Modelling and Cardiac Imaging. Bioengineering 08. ( pp.86-). London
Bourgeat, P., Acosta, O., Zuluaga, M., Fripp, J., Salvado, O., Ourselin, S. (2008). Improved cortical thickness measurement from mr images using partial volume estimation. 2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4. ( pp.205-208). IEEE.
Cheng, M., Taylor, Z. A., Ourselin, S. (2008). Towards anatomical modelling of multiple organs interaction using real time GPU based non-linear elasticity. Stud Health Technol Inform. ( Vol. NA ).
Comas, O., Taylor, Z. A., Allard, J., Ourselin, S., Salvado, O., Cotin, S., Passenger, J. (2008). Efficient nonlinear FEM for soft tissue modelling and its GPU implementation within the open source framework SOFA. International Symposium on Computational Models for Biomedical Simulation. London
de Visser, H., Comas, O., Conlan, D., Ourselin, S., Passenger, J., Salvado, O. (2008). Deforming a high-resolution mesh in real-time by mapping onto a low-resolution physical model. BIOMEDICAL SIMULATION, PROCEEDINGS. ( Vol. 5104 pp.135-146). SPRINGER-VERLAG BERLIN.
Erbou, S. G. H., Darkner, S., Fripp, J., Ourselin, S., Ersboll, B. K. (2008). Estimation of shape model parameters for 3D surfaces. 2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4. ( pp.624-627). IEEE.
Fripp, J., Bourgeat, P., Acosta, O., Jones, G., Villemagne, V., Ourselin, S., Rowe, C., Salvado, O. (2008). Generative atlases and atlas selection for C11-PIBPET-PET registration of elderly, mild cognitive impaired and Alzheimer disease patients. 2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4. ( pp.1155-1158). IEEE.
Fripp, J., Bourgeat, P., Acosta, O., Raniga, P., Modat, M., Pike, K. E., Jones, G., O'Keefe, G., Masters, C. L., Ames, D., Ellis, K. A., Maruff, P., Currie, J., Villemagne, V. L., Rowe, C. C., Salvado, O., Ourselin, S. (2008). Appearance modeling of C-11 PiB PET images: Characterizing amyloid deposition in Alzheimer's disease, mild cognitive impairment and healthy aging. Neuroimage 43(3), 430-439 doi:10.1016/j.neuroimage.2008.07.053.
Fripp, J., Bourgeat, P., Raniga, P., Acosta, O., Villemagne, V., Jones, G., O'keefe, G., Rowe, C., Ourselin, S., Salvado, O. (2008). MR-Less High Dimensional Spatial Normalization of C-11 PiB PET Images on a Population of Elderly, Mild Cognitive Impaired and Alzheimer Disease Patients. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2008, PT I, PROCEEDINGS. ( Vol. 5241 pp.442-449). SPRINGER-VERLAG BERLIN.
Golland, P., Hata, N., Ourselin, S., Ayache, N. (2008). Advances in radiological image analysis from MICCAI 2007. Academic Radiology 15(11), 1345-1346 doi:10.1016/j.acra.2008.08.005.
Joshi, B., Fedorov, A., Chrisochoides, N., Warfield, S. K., Ourselin, S. (2008). A quantitative assessment of approaches to mesh generation for surgical simulation. Engineering in Computing 24(4), 417-430 doi:10.1007/s00366-008-0088-z.
Jurcak, V., Fripp, J., Engstrom, C., Walker, D., Salvado, O., Ourselin, S., Crozier, S. (2008). Atlas based automated segmentation of the quadratus lumborum muscle using non-rigid registration on magnetic resonance images of the thoracolumbar region. 2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4. ( pp.113-116). IEEE.
Jurcak, V., Fripp, J., Engstrom, C., Walker, D., Salvado, O., Ourselin, S., Crozier, S. (2008). AUTOMATED SEGMENTATION OF THE QUADRATUS LUMBORUM MUSCLE FROM MAGNETIC RESONANCE IMAGES USING A HYBRID ATLAS BASED - GEODESIC ACTIVE CONTOUR SCHEME. 2008 30TH ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-8. ( pp.867-870). IEEE.
Le, H. D. K., Li, R. X., Ourselin, S., Potter, J. (2008). A Visual Dataflow Language for Image Segmentation and Registration. SOFTWARE AND DATA TECHNOLOGIES. ( Vol. 22 pp.60-72). SPRINGER-VERLAG BERLIN.
Mang, A., Schnabel, J. A., Crum, W. R., Modat, M., Camara-Rey, O., Palm, C., Caseira, G. B., Jager, H. R., Ourselin, S., Buzug, T. M., Hawkes, D. J. (2008). Consistency of parametric registration in serial MRI studies of brain tumor progression. International Journal of Computer Assisted Radiology and Surgery 3, 201---211-201---211 Publisher URL
Modat, M., Taylor, Z. A., Barnes, J., Hawkes, D. J., Fox, N. C., Ourselin, S. (2008). Fast Free-Form Deformation using the Normalised Mutual Information gradient and Graphics Processing Units. HP-MICCAI. Publisher URL
Ourselin, S., Ayache, N. (2008). Special issue on the 10th international conference on medical imaging and computer assisted intervention - MICCAI 2007. Medical Image Analysis 12(5), 525-526 doi:10.1016/j.media.2008.07.001.
Ourselin, S., Peters, T. M. (2008). MICCAI SPECIAL ISSUE. COMPUT AIDED SURG 13(5), 241-242 doi:10.1080/10929080802445386.
Passenger, J., Acosta, O., de Visser, H., Bauer, S., Russ, C., Ourselin, S. (2008). Texture coordinate generation of colonic surface meshes for surgical simulation. 2008 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: FROM NANO TO MACRO, VOLS 1-4. ( pp.640-643). IEEE.
Raniga, P., Bourgeat, P., Fripp, J., Acosta, O., Villemagne, V. L., Rowe, C., Masters, C. L., Jones, G., O'Keefe, G., Salvado, O., Ourselin, S. (2008). Automated C-11-PiB Standardized Uptake Value Ratio. Academic Radiology 15(11), 1376-1389 doi:10.1016/j.acra.2008.07.006.
Samur, E., Flaction, L., Spaelter, U., Bleuler, H., Hellier, D., Ourselin, S. (2008). A haptic interface with motor/brake system for colonoscopy simulation. SYMPOSIUM ON HAPTICS INTERFACES FOR VIRTUAL ENVIRONMENT AND TELEOPERATOR SYSTEMS 2008, PROCEEDINGS. ( pp.477-478). IEEE COMPUTER SOC.
Taylor, Z. A., Cheng, M., Ourselin, S. (2008). High-speed Nonlinear finite element analysis for surgical simulation using graphics processing units. IEEE Transactions on Medical Imaging 27(5), 650-663
Taylor, Z. A., Comas, O., Cheng, M., Passenger, J., Hawkes, D. J., Atkinson, D., Ourselin, S. (2008). Modelling Anisotropic Viscoelasticity for Real-Time Soft Tissue Simulation. LNCS. ( Vol. 5241 pp.703-710). New York
Zhuang, X., Rhode, K., Arridge, S., Razavi, R., Hill, D., Hawkes, D. J., Ourselin, S. (2008). An Atlas-Based Segmentation Propagation Framework Using Locally Affine Registration - Application to Automatic Whole Heart Segmentation. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2008. ( Vol. 5242 pp.425-433). Springer. Author URL
Zuluaga, M. A., Acosta, O., Bourgeat, P., Hoyos, M. H., Salvado, O., Ourselin, S. (2008). Cortical thickness measurement from magnetic resonance images using partial volume estimation - art. no. 69140J. MEDICAL IMAGING 2008: IMAGE PROCESSING, PTS 1-3. ( Vol. 6914 pp.J9140-J9140). SPIE-INT SOC OPTICAL ENGINEERING.

2007

Acosta, O., Frimmel, H., Fenster, A., Ourselin, S. (2007). Filtering and restoration of structures in 3D ultrasound images. 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3. ( pp.888-891). IEEE.
Ayache, N., Ourselin, S., Maeder, A. J. (Eds.) (2007). Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I. MICCAI (1). ( Vol. 4791 ). Springer.
Ayache, N., Ourselin, S., Maeder, A. J. (Eds.) (2007). Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part II. MICCAI (2). ( Vol. 4792 ). Springer.
Bourgeat, P., Fripp, J., Stanwell, P., Ramadan, S., Ourselin, S. (2007). MR image segmentation of the knee bone using phase information. Medical Image Analysis 11(4), 325-335 doi:10.1016/j.media.2007.03.003. Author URL
Chinchapatnam, P., Rhode, K. S., King, A. P., Gao, G., Ma, Y., Schaeffter, T., Hawkes, D. J., Razavi, R., Hill, D. L. G., Arridge, S. R., Sermesant, M. (2007). Anisotropic wave propagation and apparent conductivity estimation in a fast electrophysiological model: Application to XMR interventional imaging. Lecture Notes in Computer Science. ( Vol. 4791 pp.575-581). Springer. Author URL
Diep, T. M., Bourgeat, P., Ourselin, S. (2007). Efficient use of cerebral cortical thickness to correct brain MR segmentation. 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3. ( pp.592-595). IEEE.
Frimmel, H., Acosta, O., Fenster, A., Ourselin, S. (2007). Reduction of attenuation effects in 3D Transrectal Ultrasound images - art. no. 65130Z. Medical Imaging 2007: Ultrasonic Imaging and Signal Processing. ( Vol. 6513 pp.Z5130-Z5130). SPIE-INT SOC OPTICAL ENGINEERING.
Fripp, J., Bourgeat, P., Crozier, S., Ourselin, S. (2007). Segmentation of the bones in MRIs of the knee using phase, magnitude, and shape information. ACADEMIC RADIOLOGY. ( Vol. 14 pp.1201-1208). ELSEVIER SCIENCE INC.
Fripp, J., Bourgeat, P., Crozier, S., Ourselin, S. (2007). Shape based segmentation of MRIs of the bones in the knee using phase and intensity information - art. no. 651212. Medical Imaging 2007: Image Processing, Pts 1-3. ( Vol. 6512 pp.51212-51212). SPIE-INT SOC OPTICAL ENGINEERING.
Fripp, J., Bourgeat, P., Crozier, S., Ourselin, S. (2007). Shape based segmentation of MRIs of the knee using phase and magnitude information. Academic Radiology 14(10), 1201-1208
Fripp, J., Crozier, S., Warfield, S. K., Ourselin, S. (2007). Automatic segmentation of articular cartilage in magnetic resonance images of the knee. Medical Image Computing and Computer-Assisted Intervention- MICCAI 2007, Pt 2, Proceedings. ( Vol. 4792 pp.186-194). SPRINGER-VERLAG BERLIN.
Fripp, J., Crozier, S., Warfield, S., Ourselin, S. (2007). Automatic segmentation of the bone and extraction of the bone-cartilage interface from magnetic resonance images of the knee. Physics in Medicine and Biology 52(6), 1617-1631 doi:10.1088/0031-9155/52/6/005.
Fripp, J., Ourselin, S., Warfield, S. K., Crozier, S. (2007). Automatic segmentation of the bones from MR images of the knee. 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3. ( pp.336-339). IEEE.
Hellier, D., Passenger, J., Appleyard, M. N., Ourselin, S. (2007). Development of a new Colonoscopy Skills Trainer using Virtual Reality and Haptic Feedback. SimTecT 2007 Healthcare Simulation Conference. ( pp.8-).
Holden, M., Moreno-Vallecillo, R., Harris, A., Gomes, L. J., Diep, T. M., Bourgeat, P., Ourselin, S. (2007). Expectation maximisation classification and Laplacian based thickness measurement for cerebral cortex thickness estimation - art. no. 65120M. Medical Imaging 2007: Image Processing, Pts 1-3. ( Vol. 6512 pp.M5120-M5120). SPIE-INT SOC OPTICAL ENGINEERING.
Joshi, B., Fedorov, A., Chrisochoides, N., Warfield, S., Ourselin, S. (2007). Application-driven quantitative assessment of approaches to mesh generation. 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3. ( pp.1160-1163). IEEE.
Lee, B., Popescu, D. C., Ourselin, S. (2007). Progressive Update Approach to Real-time Cutting of Finite Element Models in Surgical Simulation. Stud Health Technol Inform. ( Vol. 125 pp.271-273).
Le, H. D. K., Li, R., Ourselin, S., Potter, J. M. (2007). ITKBoard: A visual dataflow language for biomedical image processing. ICSOFT 2007: PROCEEDINGS OF THE SECOND INTERNATIONAL CONFERENCE ON SOFTWARE AND DATA TECHNOLOGIES, VOL PL/DPS/KE/MUSE. ( pp.13-21). INSTICC-INST SYST TECHNOLOGIES INFORMATION CONTROL & COMMUNICATION.
Li, R., Ourselin, S. (2007). Towards Consistently Behaving Deformable Models for Improved Automation in Image Segmentation. In Suri, J. S., Farag, A. (Eds.). Deformable Models - Theory and Biomaterial Applications (1st ed. ). Springer Publishers.
Raniga, P., Bourgeat, P., Ourselin, S., Villemagne, V., O'Keefe, G., Rowe, C. (2007). PIB-PET segmentation for automatic SUVR normalisation without MR information. 2007 4TH IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING : MACRO TO NANO, VOLS 1-3. ( pp.348-351). IEEE.
Raniga, P., Bourgeat, P., Villemagne, V., O'Keefe, G., Rowe, C., Ourselin, S. (2007). Spline based inhomogeneity correction for C-11-PIB PET segmentation using expectation maximization. Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, Pt 1, Proceedings. ( Vol. 4791 pp.228-235). SPRINGER-VERLAG BERLIN.
Salvado, O., Bourgeat, P., Tarnayo, O. A., Zuluaga, M., Ourselin, S. (2007). Fuzzy classification of brain MRI using a priori knowledge: weighted fuzzy C-means. 2007 IEEE 11TH INTERNATIONAL CONFERENCE ON COMPUTER VISION, VOLS 1-6. ( pp.2548-2555). IEEE.
Taylor, Z., Cheng, M., Ourselin, S. (2007). Real-time nonlinear finite element analysis for surgical simulation using graphics processing units. Medical Image Computing and Computer-Assisted Intervention Conference 2007. ( pp.701-708). Brisbane
Vrtovec, T., Ourselin, S., Gomes, L., Likar, B., Pernus, F. (2007). Automated generation of curved planar reformations from MR images of the spine. Physics in Medicine and Biology 52(10), 2865-2878
Yelnik, J., Bardinet, E., Dormont, D., Malandain, G., Ourselin, S., Tand, D., Karachi, C., Ayache, N., Cornu, P., Agid, Y. (2007). A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. Neuroimage 34(2), 618-638 doi:10.1016/j.neuroimage.2006.09.026. Author URL

2006

Bourgeat, P., Fripp, J., Stanwell, P., Ramadan, S., Ourselin, S. (2006). MR image segmentation using phase information and a novel multiscale scheme. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2006, PT 2. ( Vol. 4191 pp.920-927). SPRINGER-VERLAG BERLIN.
Bourgeat, P., Ourselin, S., Stanwell, P., Ramadan, S. (2006). Texture-based segmentation of the knee bones in MRI using phase information. 2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3. ( pp.742-745). IEEE.
Fripp, J., Crozier, S., Warfield, S. K., Ourselin, S. (2006). A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages - art. no. 614123. MEDICAL IMAGING 2006: VISUALIZATION, IMAGE-GUIDED PROCEDURES, AND DISPLAY. ( Vol. 6141 pp.14123-14123). SPIE-INT SOC OPTICAL ENGINEERING.
Fripp, J., Crozier, S., Warfield, S. K., Ourselin, S. (2006). Automatic segmentation of the knee bones using 3D active shape models. 18th International Conference on Pattern Recognition, Vol 1, Proceedings. ( pp.171-174). IEEE COMPUTER SOC.
Lee, B., Popescu, D. C., Joshi, B., Ourselin, S. (2006). Efficient Topology Modification and Deformation for Finite Element Models Using Condensation. Stud Health Technol Inform. ( Vol. 119 pp.299-304).
Li, R. X., Ourselin, S. (2006). Using marker-based deformable models for deriving anatomical models from medical image databases. 2006 3RD IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING: MACRO TO NANO, VOLS 1-3. ( pp.430-433). IEEE.
Vrtovec, T., Ourselin, S., Gomes, L., Likar, B., Pernus, F. (2006). Generation of curved planar reformations from magnetic resonance images of the spine. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2006, PT 2. ( Vol. 4191 pp.135-143). SPRINGER-VERLAG BERLIN.

2005

Bourgeat, P., Fripp, J., Janke, A., Galloway, G., Crozier, S., Ourselin, S. (2005). The use of unwrapped phase in MR image segmentation: A preliminary study. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2005, PT 2. ( Vol. 3750 pp.813-820). SPRINGER-VERLAG BERLIN.
Fripp, J., Bourgeat, P., Mewes, A. J. U., Warfield, S. K., Crozier, S., Ourselin, S. (2005). 3D statistical shape models to embed spatial relationship information. COMPUTER VISION FOR BIOMEDICAL IMAGE APPLICATIONS, PROCEEDINGS. ( Vol. 3765 pp.51-60). SPRINGER-VERLAG BERLIN.
Fripp, J., Crozier, S., Warfield, S. K., Ourselin, S. (2005). Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. DICTA. ( pp.74-74). IEEE Computer Society. Publisher URL
Fripp, J., Ourselin, S., Warfield, S., Mewes, A., Crozier, S. (2005). Automatic Generation of 3D Statistical Shape Models of the Knee Bones. APRS Workshop on Digital Image Computing. ( pp.15-21).
Joshi, B., Lee, B., Popescu, D. C., Ourselin, S. (2005). Multiple Contact Approach to Collision Modelling in Surgical Simulation. Stud Health Technol Inform. ( Vol. 111 pp.237-242).
Le, H. D. K., Li, R., Ourselin, S. (2005). Towards a Visual Programming Environment Based on ITK for Medical Image Analysis. DICTA. ( pp.80-80). IEEE Computer Society. Publisher URL
Li, R., McLean, D., Ourselin, S. (2005). Vector-field-based deformable models for radiation dosimetry. APRS Workshop on Digital Image Computing, WDIC2005.
Li, R. X., Ourselin, S. (2005). A marker-induced vector field for reduced sensitivity to initialization for parametric and geometric deformable models. MEDICAL IMAGING 2005: IMAGE PROCESSING, PT 1-3. ( Vol. 5747 pp.315-325). SPIE-INT SOC OPTICAL ENGINEERING.
Ourselin, S., Li, R. X. (2005). Extension of deformable models: Hybrid approaches for analysis of medical images. 2005 27th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Vols 1-7. ( pp.7182-7185). IEEE.
Popescu, D. C., Joshi, B., Ourselin, S. (2005). Real-time topology modification for finite element models with haptic feedback. COMPUTER ANALYSIS OF IMAGES AND PATTERNS, PROCEEDINGS. ( Vol. 3691 pp.846-853). SPRINGER-VERLAG BERLIN.
Saxena, A., Gupta, G., Gerasimov, V., Ourselin, S. (2005). In use parameter estimation of inertial sensors by detecting multilevel quasi-static states. KNOWLEDGE-BASED INTELLIGENT INFORMATION AND ENGINEERING SYSTEMS, PT 4, PROCEEDINGS. ( Vol. 3684 pp.595-601). SPRINGER-VERLAG BERLIN.

2004

Lee, B., Popescu, D., Ourselin, S. (2004). Contact modelling based on displacement field redistribution for surgical simulation. MEDICAL IMAGING AND AUGMENTED REALITY, PROCEEDINGS. ( Vol. 3150 pp.337-345). SPRINGER-VERLAG BERLIN.

2003

Joshi, B., Ourselin, S. (2003). BSP-Assisted Constrained Tetrahedralization. IMR. ( pp.251-260).
Joshi, B., Ourselin, S. (2003). BSP-Assisted Constrained Tetrahedralization. Proc. 12th International Meshing Roundtable (IMR'03). ( pp.251-260).
Li, R., Ourselin, S. (2003). Accurate Curvilinear Modeling for Precise Measurements of Tubular Structures. DICTA. ( pp.243-252). CSIRO Publishing. Publisher URL
Li, R., Ourselin, S. (2003). Accurate Curvilinear Modeling for Precise Measurements of Tubular Structures. Proc. Seventh Digital Image Computing: Techniques and Applications (DICTA'03). ( pp.243-252). CSIRO Publishing.
Li, R., Ourselin, S. (2003). Accurate Curvilinear Modelling for Surgical Planning Purposes. World Congress on Medical Physics and Biomedical Engineering (WC2003).
Li, R. X., Ourselin, S. (2003). Combining front propagation with shape knowledge for accurate curvilinear modelling. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2003, PT 2. ( Vol. 2879 pp.66-74). SPRINGER-VERLAG BERLIN.
Luo, S., Li, R., Ourselin, S. (2003). A New Deformable Model Using Dynamic Gradient Vector Flow and Adaptive Balloon Forces. APRS Workshop on Digital Image Computing.
Ourselin, S. (2003). An Overview of Medical Image Segmentation. 2003.
Sun, C., Talbot, H., Ourselin, S., Adriaansen, T. (Eds.) (2003). Proceedings of the Seventh International Conference on Digital Image Computing: Techniques and Applications, DICTA 2003, 10-12 December 2003, Macquarie University, Sydney, Australia. DICTA. CSIRO Publishing.

2002

Bardinet, E., Ourselin, S., Dormont, D., Malandain, G., Tande, D., Parain, K., Ayache, N., Yelnik, J. (2002). Co-registration of histological, optical and MR data of the human brain. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION-MICCAI 2002, PT 1. ( Vol. 2488 pp.548-555). SPRINGER-VERLAG BERLIN.
Bardinet, E., Ourselin, S., Malandain, G., Tande, D., Parain, K., Ayache, N., Yelnik, J. (2002). Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections. 2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS. ( pp.329-332). IEEE.
Ourselin, S. (2002). Recalage d'images medicales par appariement de regions - Application la construction d'atlas histologiques 3D.
Ourselin, S., Benezery, K., Wilson, L. (2002). Towards Prostate Cancer Radiotherapy Planning Improvement Using Atlas Propagation. Australian Physical and Engineering Sciences in MAUicine. ( Vol. 25 pp.193-).
Prima, S., Ourselin, S., Ayache, N. (2002). Computation of the mid-sagittal plane in 3-D brain images. IEEE Transactions on Medical Imaging 21(2), 122-138

2001

Bardinet, E., Colchester, A. C. F., Roche, A., Zhu, Y., He, Y., Ourselin, S., Nailon, B., Hojjat, S. A., Ironside, J., Al-Sarraj, S., Ayache, N., Wardlaw, J. M. (2001). Registration of Reconstructed Post Mortem Optical Data with MR Scans of the Same Patient. MICCAI. ( Vol. 2208 pp.957-965). Springer. Publisher URL
Delingette, H., Bardinet, E., Rey, D., Lemarechal, J. D., Montagnat, J., Ourselin, S., Roche, A., Dormont, D., Yelnik, J., Ayache, N. (2001). YAV++: a Software Platform for Medical Image Processing and Visualization. Workshop on Interactive Medical Image Visualization and Analysis.
Ourselin, S., Bardinet, E., Dormont, D., Malandain, G., Roche, A., Ayache, N., Tandé, D., Parain, K., Yelnik, J. (2001). Fusion of Histological Sections and MR Images: Towards the Construction of an Atlas of the Human Basal Ganglia. MICCAI. ( Vol. 2208 pp.743-751). Springer. Publisher URL
Ourselin, S., Pennec, X., Stefanescu, R. (2001). Robust Registration of Multi-modal Images: Towards Real-Time Clinical Applications. INRIA.
Ourselin, S., Roche, A., Subsol, G., Pennec, X., Ayache, N. (2001). Reconstructing a 3D structure from serial histological sections. Image and Vision Computing 19(1-2), 25-31 doi:10.1016/S0262-8856(00)00052-4. Author URL

2000

Colchester, A., Ourselin, S., Zhu, Y. G., Bardinet, E., He, Y., Roche, A., Al-Sarraj, S., Nailon, B., Ironside, J., Ayache, N. (2000). 3-D reconstruction of macroscopic optical brain slice images. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2000. ( Vol. 1935 pp.95-105). SPRINGER-VERLAG BERLIN.
Ourselin, S., Roche, A., Prima, S., Ayache, N. (2000). Block matching: A general framework to improve robustness of rigid registration of medical images. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION - MICCAI 2000. ( Vol. 1935 pp.557-566). SPRINGER-VERLAG BERLIN.
Roche, A., Pennec, X., Malandain, G., Ayache, N., Ourselin, S. (2000). Generalized correlation ratio for rigid registration of 3D ultrasound with MR images. INRIA.

1999

Ourselin, S., Sattonnet, C., Roche, A., Subsol, G. (1999). Automatic alignement of histological sections for 3D reconstruction and analysis. Analytical Cellular Pathology. ( Vol. 18 pp.123-123).
Prima, S., Ourselin, S., Ayache, N. (1999). Computation of the Mid-Sagittal Plane in 3D Medical Images of the Brain. INRIA.

1998

Ourselin, S., Roche, A., Subsol, G., Pennec, X. (1998). Automatic Alignment of Histological Sections for 3D Reconstruction and Analysis. INRIA.
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