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This script is a wrapper which calls MAPS-build-brain-template-library.sh to build a brain template library.

Usage: /scratch0/NOT_BACKED_UP/clarkson/auto/src/niftk-nightly-release/NifTK-build/bin/MAPS-build-brain-template-library-batch.sh input_file output_dir 

Mandatory Arguments:

  target_atlas : average image as the target image to be registered to. 
  
  target_atlas_brain_region : brain region of the target image. 
 
  input_file : is the input file containing paths to your images and regions, in the format below: 
    target_atlas, target_atlas_brain_region, target_left_local_region, target_right_local_region, source_atlas, 
    source_atlas_brain_region, source_left_local_region, source_right_local_region
  
  output_dir : is the output directory. 
  
  output_file_only : only output the library text file ("yes" or "no").