Here is a list of all related documentation pages:

niftkContourExtractor2DImageFilter	NiftkContourExtractor2DImageFilter - Runs either the ITK ContourExtractor2DImageFilter or NifTK's modified version OrthogonalContourExtractor2DImageFilter, taking 2D images and performing marching squares contour extraction."
niftkCrop
niftkCUDAInfo
niftkDbc
niftkExtracellularVolumeFractionFromContrastEnhancedCT
niftkFFD
niftkKMeansWindowWithPiecewiseNormalisation
niftkSimpleBoundaryShiftIntegral
niftkMammogramAnalysis
CMIC Breast Segmentation
Workbench Editors
Workbench Main Window
Workbench Perspectives
Workbench Views
The Video Camera Calibration View
The Pivot Calibration View
The Ultrasound Pointer Based Calibration View
The Point Set Cropper Plugin
The RMS Error View
The Ultrasound Overlay Display
The Video Overlay Display
The VL Video Overlay Display
The MITK Segmentation View
NiftyIGI Introduction
NiftyMIDAS Introduction
The NiftySeg Segmentation View
NiftyView Introduction
The Point Set Converter
Risk Visualization
The VL Standard Display
MITK Segmentation View Test Procedure
Point Based Registration Service (PBRS)
ICP Based Registration Service (ICPBRS)
Copyright Statement
Definitions, Acronyms and Abbreviations
References
Requirements Traceability
Technical File Table of Contents
addRegions.sh
anonymise.sh
Brain-MAPS-batch.sh
Brain-MAPS.sh
compute_symmetric_transform.sh
compute_symmetric_transform_3.sh
compute_symmetric_transform_batch.sh
compute_symmetric_transform_n.sh
ComputePairwiseRegistration.sh
ComputeSymmetricBrainBSI.sh
ComputeSymmetricLocalBSI.sh
cteExtractStatsUsingAtlas.sh
cteMaskImageUsingRegions.sh
cteOverlayThicknessImageOnFreeSurfer.sh
cteRefineLabelImage.sh
cteRegisterAtlasToImage.sh
cteRegisterThicknessImageToAtlas.sh
cteRunCrossSectional.sh
cteRunLongitudinal.sh
flCrop.sh
flImport.sh
fluid.sh
fsCheckJob.sh
fsImport.sh
fsImportUsingMRIConvert.sh
fsImportVentricles.sh
fsRerunAfterEdits.sh
fsRunCleanups.sh
fsRunCrossSectionals.sh
fsRunLongitudinalAllTimepoints.sh
fsRunLongitudinalBaseTemplates.sh
fsRunStats.sh
fsShowT1.sh
fsTransferSubjects.sh
fsVoxelBasedGenerateThickness.sh
fsVoxelBasedImport.sh
fsVoxelBasedSegmentationRunCrossSectionals.sh
Hippo-MAPS-batch.sh
Hippo-MAPS.sh
libniftkCoreIO.so
libniftkICPRegService.so
libniftkNDITrackerDataSourceService.so
libniftkNiftyLinkDataSourceService.so
libniftkOIGTLSystemTimeService.so
libniftkOpenCVVideoDataSourceService.so
libniftkPointRegService.so
libniftkQtAudioDataSourceService.so
MAPS-brain-to-brain-registration-without-repeat-mask.sh
MAPS-build-brain-template-library-batch.sh
MAPS-build-brain-template-library.sh
MAPS-build-template-library-batch.sh
MAPS-build-template-library.sh
MAPS-common.sh
matchTimeStamps.sh
matlab_shell.sh
niftkAtrophyCalculator.py
niftkBET.sh
niftkBETter.py
niftkBiasFieldCorrection.py
niftkFillLesions.sh
niftkMTPFillLesions.py
niftkRegMNI-T1-B0.py
niftkT1PDT2Lesions.py
parsePickedXMLPoints.sh
propogateRegion.sh
propogationCheck.sh
reconstructMaskedImages.sh
regADNIGenerateRandomlyMisRegisteredImages.sh
regADNIGenerateRandomlyScaledImages.sh
regADNIScaleImage.sh
regADNIScaling.sh
regAIR-standard-space.sh
regAIR.sh
regAIRForVents.sh
regAREG.sh
regFFD.sh
regMisRegister.sh
symmetricReg.sh
tbssBasicStats.sh
tbssGroup.sh
updateParcellation.sh
Deprecated List