cteExtractStatsUsingAtlas.sh

(Note: This page is automatically generated. Please do not attempt to edit it!)

This script takes a data image, for example contain thickness values, and a 
registered atlas containing region labels, and calculates statistics over the image.

Usage: cteExtractStatsUsingAtlas.sh data.nii atlas.nii name [options] 

Mandatory Arguments:

  data.nii                 : The data of interest, for example an image of cortical thickness values.
  
  atlas.nii                : A registered atlas containing region labels.
  
  name                     : Basename for the output. Output files are:
              
                             <name>_native_stats_mean.csv
                             <name>_native_stats_min.csv 
                             <name>_native_stats_max.csv
                             <name>_native_stats_sd.csv
                             <name>_native_stats_count.csv
                             <name>_native_stats_median.csv
                             <name>_native_stats_iqm.csv
Options:

  -regions 1,2,3,4,5       : Comma separated list of region numbers.