(Note: This page is automatically generated. Please do not attempt to edit it!)
This script creates the unbiased template subject for FreeSurfer longitudinal analysis, for a batch of patients.

Refer to: http://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing 
This script is equivalent to running:
  recon-all -base <templateid> -tp <tp1id> -tp <tp2id> ... -all
  
Usage: fsRunLongitudinalBaseTemplates.sh dataFile [options] 

Mandatory Arguments:

  dataFile               : is a file containing 1 line per patient, where each line contains a patient name, followed by
                           the FreeSurfer directory name of each time point for that patient.
                           
                           eg.
                           ALLHA ALLHA01 ALLHA02 ALLHA03
                           ALLFA ALLFA01 ALLFA02 ALLFA03

Options:

  -echo                   : Just echo the commands, don't actually do it.