Check that both the 'target' and 'source' images in the 'Quick Start' tab are set to this image.
Open the 'Common' tab of the NiftyReg plugin and also set the 'target mask image' to this image.
Press the 'Execute' button on the NiftyReg plugin and verify that the progress bar gets updated.
When the registration finishes check that two new images have been added to the 'Data Manager'. The first should be called 'AffineRegnOf_<imagename>_To_<imagename>' and the second 'NonRigidRegnOf_<imagename>_To_<imagename>'. These images should be identical to the original target image'.
Press the 'Save Transformation' button and save both the affine and non-rigid transformations to files. Check that these have been created.
Press the 'Save Registration Parameters' button and save the registration parameters to a file. Check that this have been created and contains commands to run the 'reg_aladin' and 'reg_f3d'.
Press the 'Load Registration Parameters' button and reload this same file.
Generated on Thu Aug 4 2016 06:02:56 for NifTK by 1.8.8