NifTK  16.4.1 - 0798f20
CMIC's Translational Medical Imaging Platform
InputParameters Member List

This is the complete list of members for InputParameters, including all inherited members.

argsRegAffineInputParameters
argsRegNonRigidInputParameters
argsRegResampleInputParameters
argsSegEMInputParameters
coilCropDistanceInputParameters
DeleteFile(std::string filename)InputParametersinline
DeleteFile(std::string filename)InputParametersinline
DeleteFile(std::string filename)InputParametersinline
dirImageInputParameters
dirInputInputParameters
dirMaskInputParameters
dirOutputInputParameters
dirPrefixInputParameters
dirSubDataInputParameters
dirSubMRIInputParameters
fileImagePatternInputParameters
fileLogInputParameters
fileMaskPatternInputParameters
fileOutputCSVInputParameters
fileT1wOutputCSVInputParameters
fileT2wOutputCSVInputParameters
flgCompressionInputParameters
flgComputeMaskFromT2OnlyInputParameters
flgCropFitInputParameters
flgDebugInputParameters
flgDoNotBiasFieldCorrectT1wInputParameters
flgDoNotBiasFieldCorrectT2wInputParameters
flgDoNotRegisterInputParameters
flgExcludeAxillaInputParameters
flgFatIsBrightInputParameters
flgOverwriteInputParameters
flgRegisterImagesInputParameters
flgSaveImagesInputParameters
flgVerboseInputParameters
foutLogInputParameters
foutOutputCSVInputParameters
foutOutputT1wCSVInputParameters
foutOutputT2wCSVInputParameters
InputParameters(TCLAP::CmdLine &commandLine, bool verbose, bool flgSave, bool compression, bool debug, bool overwrite, bool noRegistration, int minNSlices, std::string dInput, std::string dOutput, std::string logfile, std::string csvfile, std::string strT1, std::string strT2, std::string strADC, std::string strDCE, std::string segEM, QStringList aSegEM, std::string regAffine, QStringList aRegAffine, std::string regNonRigid, QStringList aRegNonRigid)InputParametersinline
InputParameters(TCLAP::CmdLine &commandLine, bool verbose, bool flgRegister, bool flgSave, bool compression, bool debug, bool overwrite, bool computeMaskFromT2Only, bool excludeAxilla, bool cropFit, float coilCropDist, float maxNumberOfIterations, float nFittingLevels, bool doNotBiasFieldCorrectT1w, bool doNotBiasFieldCorrectT2w, std::string subdirMRI, std::string subdirData, std::string prefix, std::string dInput, std::string logfile, std::string csvfileT1w, std::string csvfileT2w, std::string strStructuralT2, std::string strFatSatT1, std::string strDixonWater, std::string strDixonFat, std::string segEM, QStringList aSegEM, std::string regAffine, QStringList aRegAffine, std::string regNonRigid, QStringList aRegNonRigid, std::string regResample, QStringList aRegResample)InputParametersinline
InputParameters(TCLAP::CmdLine &commandLine, bool verbose, bool compression, bool debug, bool overwrite, bool fatIsBright, std::string subDirMask, std::string fileMask, std::string subDirImage, std::string fileImage, std::string subDirData, std::string prefix, std::string dInput, std::string logfile, std::string csvfile, std::string segEM, QStringList aSegEM)InputParametersinline
MaximumNumberOfIterationsInputParameters
minNumberOfSlicesInputParameters
newCoutInputParameters
NumberOfFittingLevelsInputParameters
Print(void)InputParametersinline
Print(void)InputParametersinline
Print(void)InputParametersinline
PrintError(std::stringstream &message)InputParametersinline
PrintError(std::stringstream &message)InputParametersinline
PrintError(std::stringstream &message)InputParametersinline
PrintErrorAndExit(std::stringstream &message)InputParametersinline
PrintErrorAndExit(std::stringstream &message)InputParametersinline
PrintErrorAndExit(std::stringstream &message)InputParametersinline
PrintMessage(std::stringstream &message)InputParametersinline
PrintMessage(std::stringstream &message)InputParametersinline
PrintMessage(std::stringstream &message)InputParametersinline
PrintTag(const DictionaryType &dictionary, std::string entryId)InputParametersinline
PrintTag(const DictionaryType &dictionary, std::string entryId)InputParametersinline
PrintWarning(std::stringstream &message)InputParametersinline
PrintWarning(std::stringstream &message)InputParametersinline
PrintWarning(std::stringstream &message)InputParametersinline
progRegAffineInputParameters
progRegNonRigidInputParameters
progRegResampleInputParameters
progSegEMInputParameters
ReadImageFromFile(std::string inDir, std::string filename, std::string description, ImageType::Pointer &image)InputParametersinline
ReadImageFromFile(std::string inDir, std::string filename, std::string description, nifti_image *&image)InputParametersinline
ReadImageFromFile(std::string dirInput, std::string filename, std::string description, ImageType::Pointer &image)InputParametersinline
ReadImageFromFile(std::string dirInput, std::string filename, std::string description, nifti_image *&image)InputParametersinline
ReadImageFromFile(std::string fileInput, std::string description, ImageType::Pointer &image)InputParametersinline
ReadImageFromFile(std::string dirInput, std::string filename, std::string description, ImageType::Pointer &image)InputParametersinline
strSeriesDescADCInputParameters
strSeriesDescDCEInputParameters
strSeriesDescDixonFatInputParameters
strSeriesDescDixonWaterInputParameters
strSeriesDescFatSatT1InputParameters
strSeriesDescStructuralT2InputParameters
strSeriesDescT1WInputParameters
strSeriesDescT2WInputParameters
teeDeviceInputParameters
TeeDevice typedefInputParameters
TeeDevice typedefInputParameters
TeeDevice typedefInputParameters
TeeStream typedefInputParameters
TeeStream typedefInputParameters
TeeStream typedefInputParameters
teeStreamInputParameters
WriteImageToFile(std::string filename, std::string description, ImageType::Pointer image)InputParametersinline
WriteImageToFile(std::string filename, std::string description, nifti_image *image)InputParametersinline
WriteImageToFile(std::string filename, std::string description, ImageType::Pointer image)InputParametersinline
WriteImageToFile(std::string filename, std::string description, MaskImageType::Pointer image)InputParametersinline
WriteImageToFile(std::string filename, std::string description, nifti_image *image)InputParametersinline
WriteImageToFile(std::string filename, std::string description, ImageType::Pointer image, bool flgConcatenatePath=true)InputParametersinline
~InputParameters()InputParametersinline
~InputParameters()InputParametersinline
~InputParameters()InputParametersinline