MorphologicalSegmentorPipeline< TPixel, VImageDimension > Class Template Reference

Implementation of MorphologicalSegmentorPipelineInterface using ITK filters. More...

Inheritance diagram for MorphologicalSegmentorPipeline< TPixel, VImageDimension >:

Collaboration diagram for MorphologicalSegmentorPipeline< TPixel, VImageDimension >:

Public Types
typedef itk::Image< TPixel, VImageDimension >	GreyScaleImageType
typedef itk::Image< unsigned char, VImageDimension >	SegmentationImageType
typedef itk::BinaryThresholdImageFilter < GreyScaleImageType, SegmentationImageType >	ThresholdingFilterType
typedef itk::MIDASMaskByRegionImageFilter < SegmentationImageType, SegmentationImageType >	MaskByRegionFilterType
typedef itk::MIDASMorphologicalSegmentorLargestConnectedComponentImageFilter < SegmentationImageType, SegmentationImageType >	LargestConnectedComponentFilterType
typedef itk::MIDASConditionalErosionFilter < SegmentationImageType, GreyScaleImageType, SegmentationImageType >	ErosionFilterType
typedef itk::MIDASConditionalDilationFilter < SegmentationImageType, GreyScaleImageType, SegmentationImageType >	DilationFilterType
typedef itk::MIDASRethresholdingFilter < GreyScaleImageType, SegmentationImageType, SegmentationImageType >	RethresholdingFilterType
Public Types inherited from MorphologicalSegmentorPipelineInterface
enum	{ THRESHOLDING, EROSION, DILATION, RETHRESHOLDING }

Public Member Functions
	MorphologicalSegmentorPipeline ()
	Default constructor, creating all pipeline elements, where filters are held with smart pointers for automatic destruction. More...
virtual	~MorphologicalSegmentorPipeline ()
	No-op destructor, as all objects will be destroyed by smart pointers. More...
void	SetInputs (const GreyScaleImageType *referenceImage, const SegmentationImageType *erosionsAdditionsImage, const SegmentationImageType *erosionsSubtractionsImage, const SegmentationImageType *dilationsAdditionsImage, const SegmentationImageType *dilationsSubtractionsImage)
	Set parameters on pipeline, where parameters come directly from GUI controls. More...
void	SetErosionSubtractionsInput (const SegmentationImageType *erosionsSubtractionsImage)
	Set erosion subtractions input image. More...
void	SetDilationSubtractionsInput (const SegmentationImageType *dilationsSubtractionsImage)
	Set dilation subtractions input image. More...
void	SetParams (const MorphologicalSegmentorPipelineParams &params)
	Set parameters on pipeline, where parameters come directly from GUI controls. More...
void	SetForegroundValue (unsigned char foregroundValue)
	Sets the value to use throughout the binary pipeline for foreground (defaults to 1). More...
void	SetBackgroundValue (unsigned char backgroundValue)
	Sets the value to use throughout the binary pipeline for background (defaults to 0). More...
void	Update (const std::vector< bool > &editingFlags, const std::vector< int > &editingRegion)
	Update the pipeline. More...
SegmentationImageType::Pointer	GetOutput ()
	Gets the output image from the pipeline, used to copy back into MITK world. More...
SegmentationImageType::Pointer	GetOutput (int stage)
	Gets the output image of a specific stage of the pipeline. Used to copy back into MITK world. This function assumes that Update() has been called for that stage (see SetParams) and DisconnectPipeline() has not been called since then. More...
Public Member Functions inherited from MorphologicalSegmentorPipelineInterface
	MorphologicalSegmentorPipelineInterface ()
	Default no-op constructor. More...
virtual	~MorphologicalSegmentorPipelineInterface ()
	Default no-op destructor. More...

Public Attributes
ThresholdingFilterType::Pointer	m_ThresholdingFilter
MaskByRegionFilterType::Pointer	m_ThresholdingMaskFilter
LargestConnectedComponentFilterType::Pointer	m_ThresholdingConnectedComponentFilter
ErosionFilterType::Pointer	m_ErosionFilter
MaskByRegionFilterType::Pointer	m_ErosionMaskFilter
LargestConnectedComponentFilterType::Pointer	m_ErosionConnectedComponentFilter
DilationFilterType::Pointer	m_DilationFilter
MaskByRegionFilterType::Pointer	m_DilationMaskFilter
LargestConnectedComponentFilterType::Pointer	m_DilationConnectedComponentFilter
RethresholdingFilterType::Pointer	m_RethresholdingFilter

Detailed Description

template<typename TPixel, unsigned int VImageDimension>
class MorphologicalSegmentorPipeline< TPixel, VImageDimension >

Implementation of MorphologicalSegmentorPipelineInterface using ITK filters.

Member Typedef Documentation

template<typename TPixel , unsigned int VImageDimension>

typedef itk::MIDASConditionalDilationFilter<SegmentationImageType, GreyScaleImageType, SegmentationImageType> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::DilationFilterType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::MIDASConditionalErosionFilter<SegmentationImageType, GreyScaleImageType, SegmentationImageType> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::ErosionFilterType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::Image<TPixel, VImageDimension> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::GreyScaleImageType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::MIDASMorphologicalSegmentorLargestConnectedComponentImageFilter<SegmentationImageType, SegmentationImageType> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::LargestConnectedComponentFilterType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::MIDASMaskByRegionImageFilter<SegmentationImageType, SegmentationImageType> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::MaskByRegionFilterType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::MIDASRethresholdingFilter<GreyScaleImageType, SegmentationImageType, SegmentationImageType> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::RethresholdingFilterType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::Image<unsigned char, VImageDimension> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SegmentationImageType

template<typename TPixel , unsigned int VImageDimension>

typedef itk::BinaryThresholdImageFilter<GreyScaleImageType, SegmentationImageType> MorphologicalSegmentorPipeline< TPixel, VImageDimension >::ThresholdingFilterType

Constructor & Destructor Documentation

template<typename TPixel , unsigned int VImageDimension>

MorphologicalSegmentorPipeline< TPixel, VImageDimension >::MorphologicalSegmentorPipeline

(

)

Default constructor, creating all pipeline elements, where filters are held with smart pointers for automatic destruction.

template<typename TPixel , unsigned int VImageDimension>

virtual MorphologicalSegmentorPipeline< TPixel, VImageDimension >::~MorphologicalSegmentorPipeline ( )

virtual

No-op destructor, as all objects will be destroyed by smart pointers.

Member Function Documentation

template<typename TPixel , unsigned int VImageDimension>

SegmentationImageType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::GetOutput

(

)

Gets the output image from the pipeline, used to copy back into MITK world.

template<typename TPixel , unsigned int VImageDimension>

SegmentationImageType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::GetOutput

(

int

stage

)

Gets the output image of a specific stage of the pipeline. Used to copy back into MITK world. This function assumes that Update() has been called for that stage (see SetParams) and DisconnectPipeline() has not been called since then.

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SetBackgroundValue

(

unsigned char

backgroundValue

)

Sets the value to use throughout the binary pipeline for background (defaults to 0).

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SetDilationSubtractionsInput

(

const SegmentationImageType *

dilationsSubtractionsImage

)

Set dilation subtractions input image.

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SetErosionSubtractionsInput

(

const SegmentationImageType *

erosionsSubtractionsImage

)

Set erosion subtractions input image.

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SetForegroundValue

(

unsigned char

foregroundValue

)

Sets the value to use throughout the binary pipeline for foreground (defaults to 1).

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SetInputs	(	const GreyScaleImageType *	referenceImage,
		const SegmentationImageType *	erosionsAdditionsImage,
		const SegmentationImageType *	erosionsSubtractionsImage,
		const SegmentationImageType *	dilationsAdditionsImage,
		const SegmentationImageType *	dilationsSubtractionsImage
	)

Set parameters on pipeline, where parameters come directly from GUI controls.

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::SetParams

(

const MorphologicalSegmentorPipelineParams &

params

)

Set parameters on pipeline, where parameters come directly from GUI controls.

template<typename TPixel , unsigned int VImageDimension>

void MorphologicalSegmentorPipeline< TPixel, VImageDimension >::Update ( const std::vector< bool > &  editingFlags, const std::vector< int > &  editingRegion  )

virtual

Update the pipeline.

Parameters

editingFlags	array of 4 booleans to say which images are being editted.
editingRegion	a vector of 6 integers containing the size[0-2], and index[3-5] of the affected region.

Implements MorphologicalSegmentorPipelineInterface.

Member Data Documentation

template<typename TPixel , unsigned int VImageDimension>

LargestConnectedComponentFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_DilationConnectedComponentFilter

template<typename TPixel , unsigned int VImageDimension>

DilationFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_DilationFilter

template<typename TPixel , unsigned int VImageDimension>

MaskByRegionFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_DilationMaskFilter

template<typename TPixel , unsigned int VImageDimension>

LargestConnectedComponentFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_ErosionConnectedComponentFilter

template<typename TPixel , unsigned int VImageDimension>

ErosionFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_ErosionFilter

template<typename TPixel , unsigned int VImageDimension>

MaskByRegionFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_ErosionMaskFilter

template<typename TPixel , unsigned int VImageDimension>

RethresholdingFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_RethresholdingFilter

template<typename TPixel , unsigned int VImageDimension>

LargestConnectedComponentFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_ThresholdingConnectedComponentFilter

template<typename TPixel , unsigned int VImageDimension>

ThresholdingFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_ThresholdingFilter

template<typename TPixel , unsigned int VImageDimension>

MaskByRegionFilterType::Pointer MorphologicalSegmentorPipeline< TPixel, VImageDimension >::m_ThresholdingMaskFilter

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The documentation for this class was generated from the following file:

• MorphologicalSegmentorPipeline.h