Inheritance diagram for niftk::BaseSegmentorController:

Collaboration diagram for niftk::BaseSegmentorController:

Public Member Functions
	BaseSegmentorController (IBaseView *view)

virtual	~BaseSegmentorController ()

virtual void	SetupGUI (QWidget *parent) override
	Sets up the GUI. This function has to be called from the CreateQtPartControl function of the view. More...

mitk::ToolManager *	GetToolManager () const
	Returns the segmentation tool manager used by the segmentor. More...

template<class ToolType >
ToolType *	GetToolByType ()

virtual bool	EventFilter (const mitk::StateEvent *stateEvent) const override
	Returns true if the event should be filtered, i.e. not processed, otherwise false. More...

virtual bool	EventFilter (mitk::InteractionEvent *event) const override
	Returns true if the event should be filtered, i.e. not processed, otherwise false. More...

const QColor &	GetDefaultSegmentationColour () const
	Default colour to be displayed in the new segmentation dialog box. More...

void	SetDefaultSegmentationColour (const QColor &defaultSegmentationColour)
	Default colour to be displayed in the new segmentation dialog box. More...

virtual void	OnViewGetsActivated () override
	Called when the BlueBerry view that hosts the GUI for this controller gets activated. More...

Public Member Functions inherited from niftk::BaseController
	BaseController (IBaseView *view)
	Constructs a BaseController object. More...

virtual	~BaseController ()
	Destructs the BaseController object. More...

ImageOrientation	GetOrientation () const
	Returns the orientation of the selected render window. Returns IMAGE_ORIENTATION_UNKNOWN if no window is selected or the selected window is a 3D window. More...

int	GetSliceIndex () const
	Returns the index of the displayed slice in the currently selected window. Returns -1 if no window is selected or the selected window is a 3D window. More...

mitk::Point3D	GetSelectedPosition () const
	Returns the selected position in the current editor (render window part). The selected position is the voxel at the intersection of the crosshair planes. More...

virtual void	OnViewGetsDeactivated ()
	Called when the BlueBerry view that hosts the GUI for this controller gets deactivated. More...

virtual void	OnViewGetsVisible ()
	Called when the BlueBerry view that hosts the GUI for this controller becomes visible. More...

virtual void	OnViewGetsHidden ()
	Called when the BlueBerry view that hosts the GUI for this controller becomes hidden. More...

Public Member Functions inherited from niftk::StateMachineEventFilter
	mitkClassMacroNoParent (StateMachineEventFilter) StateMachineEventFilter()

virtual	~StateMachineEventFilter ()

Protected Slots
virtual void	OnNewSegmentationButtonClicked ()=0
	Called from niftkSegmentationSelectorWidget when the 'Start/restart segmentation' button is clicked. More...

Protected Member Functions
virtual void	OnActiveToolChanged ()
	Called from niftkToolSelectorWidget when a tool changes. More...

std::vector< mitk::DataNode * >	GetWorkingData ()
	Gets a vector of the working data nodes registered with the tool manager. The data nodes normally hold image, but could be surfaces etc. Empty list is returned if this can't be found. More...

mitk::Image *	GetWorkingImage (int index)
	Gets a single binary image registered with the ToolManager. Returns nullptr if it can't be found or is not an image. More...

mitk::DataNode *	GetReferenceNode ()
	Gets the reference node from the tool manager or nullptr if it can't be found. More...

mitk::Image *	GetReferenceImage ()
	Gets the reference image from the tool manager, or nullptr if this doesn't yet exist or is not an image. Assumes that a reference (grey scale) image is always registered with the tool manager. More...

mitk::DataNode *	FindReferenceNodeFromSegmentationNode (const mitk::DataNode::Pointer segmentationNode)
	Gets the reference node that the segmentation node belongs to. Assumes that the reference (grey scale) node is always the direct parent of the segmentation (binary) node, so we simply search for a non binary parent. More...

void	SetReferenceImageSelected ()
	Makes sure the reference image is the selected one. More...

virtual bool	IsAReferenceImage (const mitk::DataNode::Pointer node)
	Returns true if node represent an image that is non binary, and false otherwise. More...

virtual bool	IsASegmentationImage (const mitk::DataNode::Pointer node)
	Returns true if node represents an image that is binary, and false otherwise. More...

virtual bool	IsAWorkingImage (const mitk::DataNode::Pointer node)
	Returns true if node represents an image that is binary, and false otherwise. More...

virtual std::vector < mitk::DataNode * >	GetWorkingDataFromSegmentationNode (const mitk::DataNode::Pointer node)
	Assumes that a Working Node == a Segmentation Node, so simply returns the input node. More...

virtual mitk::DataNode *	GetSegmentationNodeFromWorkingData (const mitk::DataNode::Pointer node)
	Assumes that a Working Node == a Segmentation Node, so simply returns the input node. More...

virtual bool	CanStartSegmentationForBinaryNode (const mitk::DataNode::Pointer node)=0
	Subclasses decide if they can restart the segmentation for a binary node. More...

virtual void	ApplyDisplayOptions (mitk::DataNode *node)
	Decorates a DataNode according to the user preference settings, or requirements for binary images. More...

int	GetReferenceImageSliceAxis ()
	Returns which image coordinate corresponds to the currently selected orientation. Retrieves the currently active QmitkRenderWindow, and the reference image registered with the ToolManager, and returns the Image axis that the current view is looking along, or -1 if it can not be worked out. More...

int	GetReferenceImageSliceAxis (ImageOrientation orientation)
	Returns which image coordinate corresponds to the given orientation. Looks up the ReferenceImage registered with ToolManager and returns the axis [0,1,2] that corresponds to the given orientation, or -1 if it can't be found. More...

int	GetReferenceImageSliceIndex ()
	Returns the slice index in the reference image that corresponds to the currently displayed slice. This might be different to the slice displayed in the viewer, depending on the up direction. More...

int	GetReferenceImageSliceUpDirection ()
	Returns the "Up" direction which is the anterior, superior or right direction depending on which orientation you are interested in. More...

virtual mitk::DataNode *	CreateNewSegmentation ()
	Creates from derived classes when the the user hits the "New segmentation", producing a dialog box, and on successful completion of the dialog box, will create a new segmentation image. More...

BaseSegmentorGUI *	GetSegmentorGUI () const
	Gets the segmentor widget that holds the GUI components of the view. More...

bool	HasInitialisedWorkingData ()
	Utility method to check that we have initialised all the working data such as contours, region growing images etc. More...

virtual void	OnDataManagerSelectionChanged (const QList< mitk::DataNode::Pointer > &nodes)
	Called when the selection changes in the data manager. More...

Protected Member Functions inherited from niftk::BaseController
mitk::DataStorage *	GetDataStorage () const

void	RequestRenderWindowUpdate () const

QList< mitk::DataNode::Pointer >	GetDataManagerSelection () const

mitk::SliceNavigationController *	GetSliceNavigationController () const

virtual void	OnSelectedSliceChanged (niftk::ImageOrientation orientation, int sliceIndex)
	Called when the selected slice changes. This happens when selected window changes in the current editor (render window part) or when the focus is on a 2D render window in the current editor and the selected slice changes, either through interaction (e.g. by scrolling with the mouse wheel) or through an API call. More...

virtual BaseGUI *	CreateGUI (QWidget *parent)=0
	Creates the widget that holds the GUI components of the view. This function is called from CreateQtPartControl. Derived classes should provide their implementation that returns an object whose class derives from niftk::BaseGUI. More...

BaseGUI *	GetGUI () const
	Gets the widget that holds the GUI components of the view. More...

IBaseView *	GetView () const
	Gets the segmentor BlueBerry view. More...

virtual void	OnFocusChanged ()
	Called when the window focus changes, and tracks the current mitk::BaseRenderer*. More...

virtual mitk::BaseRenderer *	GetFocused2DRenderer () const
	Returns the currently focused renderer, as this class is tracking the focus changes. More...

virtual void	OnNodeAdded (const mitk::DataNode *node)
	Called when a data node is added to the data storage. Empty implementation. Derived classes can override it. More...

virtual void	OnNodeChanged (const mitk::DataNode *node)
	Called when a data node in the data storage has changed. Empty implementation. Derived classes can override it. More...

virtual void	OnNodeRemoved (const mitk::DataNode *node)
	Called when a data node has been removed from the data storage. Empty implementation. Derived classes can override it. More...

virtual void	OnNodeDeleted (const mitk::DataNode *node)
	Called when a data node has been deleted that has previously been in the data storage. Empty implementation. Derived classes can override it. More...

virtual void	OnNodeVisibilityChanged (const mitk::DataNode node, const mitk::BaseRenderer renderer)
	Called when the visibility of a data node in the data storage has changed. The renderer is nullptr if the global visibility has changed. Empty implementation. Derived classes can override it. More...

void	WaitCursorOn ()
	Convenient method to set and reset a wait cursor ("hourglass") More...

void	WaitCursorOff ()
	Convenient method to restore the standard cursor. More...

void	BusyCursorOn ()
	Convenient method to set and reset a busy cursor. More...

void	BusyCursorOff ()
	Convenient method to restore the standard cursor. More...

Friends
class	BaseSegmentorView

Constructor & Destructor Documentation

niftk::BaseSegmentorController::BaseSegmentorController ( IBaseView * view )

niftk::BaseSegmentorController::~BaseSegmentorController ( )

virtual

Member Function Documentation

void niftk::BaseSegmentorController::ApplyDisplayOptions ( mitk::DataNode * node )

protectedvirtual

Decorates a DataNode according to the user preference settings, or requirements for binary images.

virtual bool niftk::BaseSegmentorController::CanStartSegmentationForBinaryNode ( const mitk::DataNode::Pointer node )

protectedpure virtual

Subclasses decide if they can restart the segmentation for a binary node.

Implemented in niftk::GeneralSegmentorController, and niftk::MorphologicalSegmentorController.

mitk::DataNode * niftk::BaseSegmentorController::CreateNewSegmentation ( )

protectedvirtual

Creates from derived classes when the the user hits the "New segmentation", producing a dialog box, and on successful completion of the dialog box, will create a new segmentation image.

Returns: mitk::DataNode* A new segmentation or NULL if the user cancels the dialog box.

bool niftk::BaseSegmentorController::EventFilter ( const mitk::StateEvent * stateEvent ) const

overridevirtual

Returns true if the event should be filtered, i.e. not processed, otherwise false.

Reimplemented from niftk::StateMachineEventFilter.

bool niftk::BaseSegmentorController::EventFilter ( mitk::InteractionEvent * event ) const

overridevirtual

Returns true if the event should be filtered, i.e. not processed, otherwise false.

Reimplemented from niftk::StateMachineEventFilter.

mitk::DataNode * niftk::BaseSegmentorController::FindReferenceNodeFromSegmentationNode ( const mitk::DataNode::Pointer segmentationNode )

protected

Gets the reference node that the segmentation node belongs to. Assumes that the reference (grey scale) node is always the direct parent of the segmentation (binary) node, so we simply search for a non binary parent.

const QColor & niftk::BaseSegmentorController::GetDefaultSegmentationColour ( ) const

Default colour to be displayed in the new segmentation dialog box.

mitk::Image * niftk::BaseSegmentorController::GetReferenceImage ( )

protected

Gets the reference image from the tool manager, or nullptr if this doesn't yet exist or is not an image. Assumes that a reference (grey scale) image is always registered with the tool manager.

int niftk::BaseSegmentorController::GetReferenceImageSliceAxis ( )

protected

Returns which image coordinate corresponds to the currently selected orientation. Retrieves the currently active QmitkRenderWindow, and the reference image registered with the ToolManager, and returns the Image axis that the current view is looking along, or -1 if it can not be worked out.

int niftk::BaseSegmentorController::GetReferenceImageSliceAxis ( ImageOrientation orientation )

protected

Returns which image coordinate corresponds to the given orientation. Looks up the ReferenceImage registered with ToolManager and returns the axis [0,1,2] that corresponds to the given orientation, or -1 if it can't be found.

int niftk::BaseSegmentorController::GetReferenceImageSliceIndex ( )

protected

Returns the slice index in the reference image that corresponds to the currently displayed slice. This might be different to the slice displayed in the viewer, depending on the up direction.

int niftk::BaseSegmentorController::GetReferenceImageSliceUpDirection ( )

protected

Returns the "Up" direction which is the anterior, superior or right direction depending on which orientation you are interested in.

mitk::DataNode * niftk::BaseSegmentorController::GetReferenceNode ( )

protected

Gets the reference node from the tool manager or nullptr if it can't be found.

mitk::DataNode * niftk::BaseSegmentorController::GetSegmentationNodeFromWorkingData ( const mitk::DataNode::Pointer node )

protectedvirtual

Assumes that a Working Node == a Segmentation Node, so simply returns the input node.

Reimplemented in niftk::MorphologicalSegmentorController.

BaseSegmentorGUI * niftk::BaseSegmentorController::GetSegmentorGUI ( ) const

protected

Gets the segmentor widget that holds the GUI components of the view.

template<class ToolType >

ToolType * niftk::BaseSegmentorController::GetToolByType ( )

mitk::ToolManager * niftk::BaseSegmentorController::GetToolManager ( ) const

Returns the segmentation tool manager used by the segmentor.

std::vector< mitk::DataNode * > niftk::BaseSegmentorController::GetWorkingData ( )

protected

Gets a vector of the working data nodes registered with the tool manager. The data nodes normally hold image, but could be surfaces etc. Empty list is returned if this can't be found.

std::vector< mitk::DataNode * > niftk::BaseSegmentorController::GetWorkingDataFromSegmentationNode ( const mitk::DataNode::Pointer node )

protectedvirtual

Assumes that a Working Node == a Segmentation Node, so simply returns the input node.

Reimplemented in niftk::GeneralSegmentorController, and niftk::MorphologicalSegmentorController.

mitk::Image * niftk::BaseSegmentorController::GetWorkingImage ( int index )

protected

Gets a single binary image registered with the ToolManager. Returns nullptr if it can't be found or is not an image.

bool niftk::BaseSegmentorController::HasInitialisedWorkingData ( )

protected

Utility method to check that we have initialised all the working data such as contours, region growing images etc.

bool niftk::BaseSegmentorController::IsAReferenceImage ( const mitk::DataNode::Pointer node )

protectedvirtual

Returns true if node represent an image that is non binary, and false otherwise.

bool niftk::BaseSegmentorController::IsASegmentationImage ( const mitk::DataNode::Pointer node )

protectedvirtual

Returns true if node represents an image that is binary, and false otherwise.

Reimplemented in niftk::GeneralSegmentorController, and niftk::MorphologicalSegmentorController.

bool niftk::BaseSegmentorController::IsAWorkingImage ( const mitk::DataNode::Pointer node )

protectedvirtual

Returns true if node represents an image that is binary, and false otherwise.

Reimplemented in niftk::MorphologicalSegmentorController.

void niftk::BaseSegmentorController::OnActiveToolChanged ( )

protectedvirtual

Called from niftkToolSelectorWidget when a tool changes.

Note: The view is not created when the GUI is set up, therefore we cannot initialise this variable at another place.

Set the focus back to the main window. This is needed so that the keyboard shortcuts (like 'a' and 'z' for changing slice) keep on working.

void niftk::BaseSegmentorController::OnDataManagerSelectionChanged ( const QList< mitk::DataNode::Pointer > & nodes )

protectedvirtual

Called when the selection changes in the data manager.

See also: QmitkAbstractView::OnSelectionChanged.

It is not allowed to work on several segmentation at a time, simultaneously. If you are already working on a segmentation, you have to finalise it (OK) or discard it (Cancel) before you can start segmenting another image. (Or making another segmentation of the same image.)

Reimplemented in niftk::MorphologicalSegmentorController.

virtual void niftk::BaseSegmentorController::OnNewSegmentationButtonClicked ( )

protectedpure virtualslot

Called from niftkSegmentationSelectorWidget when the 'Start/restart segmentation' button is clicked.

void niftk::BaseSegmentorController::OnViewGetsActivated ( )

overridevirtual

Called when the BlueBerry view that hosts the GUI for this controller gets activated.

Reimplemented from niftk::BaseController.

void niftk::BaseSegmentorController::SetDefaultSegmentationColour ( const QColor & defaultSegmentationColour )

Default colour to be displayed in the new segmentation dialog box.

void niftk::BaseSegmentorController::SetReferenceImageSelected ( )

protected