niftkCombineSegmentations.cxx File Reference

Include dependency graph for niftkCombineSegmentations.cxx:

Typedefs
typedef short	PixelType

Functions
void	StartUsage (char *name)
void	computeSTAPLE (std::string outputFilename, const std::vector< std::string > &inputFilenames, PixelType foregroundValue, double threshold)
void	computeSBA (std::string outputFilename, const std::vector< std::string > &inputFilenames, PixelType foregroundValue, std::string userDefinedUndecidedLabel, double mrf)
void	computeVOTE (std::string outputFilename, const std::vector< std::string > &inputFilenames, PixelType foregroundValue, std::string userDefinedUndecidedLabel)
int	main (int argc, char **argv)

Variables
const unsigned int	Dimension = 3

Typedef Documentation

typedef short PixelType

Function Documentation

void computeSBA	(	std::string	outputFilename,
		const std::vector< std::string > &	inputFilenames,
		PixelType	foregroundValue,
		std::string	userDefinedUndecidedLabel,
		double	mrf
	)

Combine segmentation using shape based averaging.

Parameters

std::string	outputFilename The output filename
const	std::vector<std::string>& inputFilenames The vector storing the input filenames
PixelType	foregroundValue The mean mode used in the SBA.
std::string	userDefinedUndecidedLabel The user-defined undecided label.

void computeSTAPLE	(	std::string	outputFilename,
		const std::vector< std::string > &	inputFilenames,
		PixelType	foregroundValue,
		double	threshold
	)

Combine segmentation using STAPLE.

Parameters

std::string	outputFilename The output filename
const	std::vector<std::string>& inputFilenames The vector storing the input filenames
PixelType	foregroundValue The foreground values in the input images identifying the segmentations.
double	threshold Threshold probabability value.

void computeVOTE	(	std::string	outputFilename,
		const std::vector< std::string > &	inputFilenames,
		PixelType	foregroundValue,
		std::string	userDefinedUndecidedLabel
	)

Combine segmentation using voting.

Parameters

std::string	outputFilename The output filename
const	std::vector<std::string>& inputFilenames The vector storing the input filenames
PixelType	foregroundValue The foreground values in the input images identifying the segmentations.
std::string	userDefinedUndecidedLabel The user-defined undecided label.

int main	(	int	argc,
		char **	argv
	)

void StartUsage

(

char *

name

)

Variable Documentation

const unsigned int Dimension = 3