niftkDbc.cxx File Reference

Include dependency graph for niftkDbc.cxx:

Enumerations
enum	{   O_INPUT_FILE1 =0, O_INPUT_MASK1, O_INPUT_FILE2, O_INPUT_MASK2,   O_OUTPUT_FILE1, O_OUTPUT_FILE2, O_INT_RADIUS }

Functions
int	main (int argc, char **argv)
	Differential bias correction. More...

Variables
struct niftk::CommandLineArgumentDescription	clArgList []

Enumeration Type Documentation

anonymous enum

Enumerator
O_INPUT_FILE1
O_INPUT_MASK1
O_INPUT_FILE2
O_INPUT_MASK2
O_OUTPUT_FILE1
O_OUTPUT_FILE2
O_INT_RADIUS

Function Documentation

int main	(	int	argc,
		char **	argv
	)

Differential bias correction.

Implements "Correction of differential intensity inhomogeneity in longitudinal MR images", Lewis and Fox, 2004, NeuroImage.

Variable Documentation

struct niftk::CommandLineArgumentDescription clArgList[]

Initial value:

= {

  {OPT_STRING|OPT_REQ, "i1",  "filename", "Input image 1."},

  {OPT_STRING, "m1",  "filename", "Input mask for image 1."},
  
  {OPT_STRING|OPT_REQ, "i2",  "filename", "Input image 2."},
  
  {OPT_STRING, "m2",  "filename", "Input mask for image 2."},
  
  {OPT_STRING|OPT_REQ, "o1", "filename", "Output image 1."},
  
  {OPT_STRING|OPT_REQ, "o2", "filename", "Output image 2."},
  
  {OPT_INT, "radius", "value", "Radius of the median filter."},

  {OPT_DONE, NULL, NULL, "Perform the differential bias correction on the two images."}
   
}