niftkDicomSeriesReadImageWrite.cxx File Reference

Include dependency graph for niftkDicomSeriesReadImageWrite.cxx:

Classes
struct	arguments

Typedefs
typedef signed short	PixelType
typedef itk::Image< PixelType, Dimension >	ImageType
typedef itk::ImageSeriesReader < ImageType >	ReaderType
typedef itk::GDCMSeriesFileNames	NamesGeneratorType

Enumerations
enum	{   O_VERBOSE, O_DEBUG, O_SERIES, O_FILENAME_FILTER,   O_OUTPUT_FILESTEM, O_OUTPUT_FILESUFFIX, O_INPUT_DICOM_DIRECTORY }

Functions
bool	WriteSeriesAsVolume (bool flgVerbose, bool flgDebug, std::string seriesIdentifier, std::string filenameFilter, char *fileOutput, NamesGeneratorType *nameGenerator, ReaderType *reader)
int	main (int argc, char *argv[])

Variables
struct niftk::CommandLineArgumentDescription	clArgList []
const unsigned int	Dimension = 3

Typedef Documentation

typedef itk::Image< PixelType, Dimension > ImageType

typedef itk::GDCMSeriesFileNames NamesGeneratorType

typedef signed short PixelType

typedef itk::ImageSeriesReader< ImageType > ReaderType

Enumeration Type Documentation

anonymous enum

Enumerator
O_VERBOSE
O_DEBUG
O_SERIES
O_FILENAME_FILTER
O_OUTPUT_FILESTEM
O_OUTPUT_FILESUFFIX
O_INPUT_DICOM_DIRECTORY

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

bool WriteSeriesAsVolume	(	bool	flgVerbose,
		bool	flgDebug,
		std::string	seriesIdentifier,
		std::string	filenameFilter,
		char *	fileOutput,
		NamesGeneratorType *	nameGenerator,
		ReaderType *	reader
	)

Variable Documentation

struct niftk::CommandLineArgumentDescription clArgList[]

Initial value:

= {

  {OPT_SWITCH, "v", NULL, "Verbose output."},
  {OPT_SWITCH, "dbg", NULL, "Output debugging info."},

  {OPT_STRING, "series", "name", "The input series name required."},
  {OPT_STRING, "filter", "pattern", "Only consider DICOM files that contain the string 'pattern'."},

  {OPT_STRING|OPT_REQ, "of", "filestem", "The output image volume(s) filestem (filename will be: 'filestem_%2d.suffix')."},
  {OPT_STRING|OPT_REQ, "os", "suffix",   "The output image suffix to use when using option '-or'."},

  {OPT_STRING|OPT_REQ|OPT_LONELY, NULL, "directory", "Input DICOM directory."},

  {OPT_DONE, NULL, NULL, 
   "Program to convert the content of a DICOM directory into image volumes.\n"
  }
}

const unsigned int Dimension = 3