niftkKMeansWindowWithPiecewiseNormalisationBSI.cxx File Reference

Include dependency graph for niftkKMeansWindowWithPiecewiseNormalisationBSI.cxx:

Functions
double	calculateBSI (char *baselineImageName, char *repeatImageName, char *baselineMaskName, char *repeatMaskName, char *subROIMaskName, int numberOfErosion, int numberOfDilation, double userLowerWindow, double userUpperWindow, const itk::Array< double > &baselineFinalMeans, const itk::Array< double > &repeatFinalMeans, const itk::Array< double > &baselineFinalStds, const itk::Array< double > &repeatFinalStds, double slope, double intercept)
double	calculateBSIPiecewise (char *baselineImageName, char *repeatImageName, char *baselineMaskName, char *repeatMaskName, char *subROIMaskName, int numberOfErosion, int numberOfDilation, double userLowerWindow, double userUpperWindow, const itk::Array< double > &baselineFinalMeans, const itk::Array< double > &repeatFinalMeans, const itk::Array< double > &baselineFinalStds, const itk::Array< double > &repeatFinalStds, double slopeCsfGm, double interceptCsfGm, double slopeGmWm, double interceptGmWm)
void	saveNormalisedImage (char *repeatImageName, char *outputImageName, double slope, double intercept)
int	main (int argc, char *argv[])

Function Documentation

double calculateBSI	(	char *	baselineImageName,
		char *	repeatImageName,
		char *	baselineMaskName,
		char *	repeatMaskName,
		char *	subROIMaskName,
		int	numberOfErosion,
		int	numberOfDilation,
		double	userLowerWindow,
		double	userUpperWindow,
		const itk::Array< double > &	baselineFinalMeans,
		const itk::Array< double > &	repeatFinalMeans,
		const itk::Array< double > &	baselineFinalStds,
		const itk::Array< double > &	repeatFinalStds,
		double	slope,
		double	intercept
	)

Calculate BSI using the linear regression results.

double calculateBSIPiecewise	(	char *	baselineImageName,
		char *	repeatImageName,
		char *	baselineMaskName,
		char *	repeatMaskName,
		char *	subROIMaskName,
		int	numberOfErosion,
		int	numberOfDilation,
		double	userLowerWindow,
		double	userUpperWindow,
		const itk::Array< double > &	baselineFinalMeans,
		const itk::Array< double > &	repeatFinalMeans,
		const itk::Array< double > &	baselineFinalStds,
		const itk::Array< double > &	repeatFinalStds,
		double	slopeCsfGm,
		double	interceptCsfGm,
		double	slopeGmWm,
		double	interceptGmWm
	)

Calculate BSI using the linear regression results.

int main	(	int	argc,
		char *	argv[]
	)

void saveNormalisedImage	(	char *	repeatImageName,
		char *	outputImageName,
		double	slope,
		double	intercept
	)

Save normalised repeat image.