Segments a mammogram generating a binary mask corresponding to the pectoral muscle.

This program uses ITK ImageFileReader to load an image, and then uses MammogramPectoralisSegmentationImageFilter to segment the breast region before writing the output with ITK ImageFileWriter.

• Dimensions: 2.
• Pixel type: Scalars only of unsigned char, char, unsigned short, short, unsigned int, int, unsigned long, long, float and double.

Caveats

• None

(Note: This page is automatically generated. Please do not attempt to edit it!)

USAGE: 

   niftkMammogramPectoralisSegmentation  [--returnparameterfile
                                        <std::string>]
                                        [--processinformationaddress
                                        <std::string>] [--xml] [--echo]
                                        [--dbg] [--ssd] [-t <std::string>]
                                        [--ignoreView] [-v] [-o
                                        <std::string>] [-n <std::string>]
                                        [--op <std::string>] [-m
                                        <std::string>] [-i <std::string>]
                                        [--] [--version] [-h]


Where: 

   --returnparameterfile <std::string>
     Filename in which to write simple return parameters (int, float,
     int-vector, etc.) as opposed to bulk return parameters (image,
     geometry, transform, measurement, table).

   --processinformationaddress <std::string>
     Address of a structure to store process information (progress, abort,
     etc.). (default: 0)

   --xml
     Produce xml description of command line arguments (default: 0)

   --echo
     Echo the command line arguments (default: 0)

   --dbg
     Generate debugging output.

   --ssd
     Optimise the sum of squared differences [normalised
     cross-correlation].

   -t <std::string>,  --ot <std::string>
     Output the final pectoral muscle template image

   --ignoreView
     Continue the processing even if the image is believed to be a CC view.

   -v,  --verbose
     Generate verbose output.

   -o <std::string>,  --outputImage <std::string>
     Output image with pectoral muscle removed

   -n <std::string>,  --om <std::string>
     Output binary mammogram mask image

   --op <std::string>
     Output binary pectoral mask image

   -m <std::string>,  --im <std::string>
     Mask image

   -i <std::string>,  --inputImage <std::string>
     Input image

   --,  --ignore_rest
     Ignores the rest of the labeled arguments following this flag.

   --version
     Displays version information and exits.

   -h,  --help
     Displays usage information and exits.


   Description: Segments a mammogram generating a binary mask corresponding
   to the pectoral muscle.

   Author(s): John Hipwell.