niftkMeshFromLabels.cxx File Reference

Include dependency graph for niftkMeshFromLabels.cxx:

Enumerations
enum	_cmdLineArgs {   O_SURF = 0, O_SEPARATE, O_OUTPUT, O_LABELS,   O_FACETANGLE, O_FACETEDGE, O_FACETERROR, O_CELLSIZE,   O_CELLRATIO, O_INPUT_VOL }

Functions
static bool	_ParseLabel (std::vector< int > &r_dstList, const std::string &labelString)
static bool	_ParseLabelList (std::vector< int > &r_dstList, const std::string &labelList, const boost::char_separator< char > &separator)
static bool	_WriteMesh (vtkSmartPointer< vtkUnstructuredGrid > sp_grid, const std::string &path)
static std::string	_LabelListToString (const std::vector< int > &labels)
int	main (int argc, char *argv[])

Variables
static niftk::CommandLineArgumentDescription	g_opts []

Enumeration Type Documentation

enum _cmdLineArgs

Enumerator
O_SURF
O_SEPARATE
O_OUTPUT
O_LABELS
O_FACETANGLE
O_FACETEDGE
O_FACETERROR
O_CELLSIZE
O_CELLRATIO
O_INPUT_VOL

Function Documentation

static std::string _LabelListToString ( const std::vector< int > &  labels )

static

static bool _ParseLabel ( std::vector< int > &  r_dstList, const std::string &  labelString  )

static

static bool _ParseLabelList ( std::vector< int > &  r_dstList, const std::string &  labelList, const boost::char_separator< char > &  separator  )

static

static bool _WriteMesh ( vtkSmartPointer< vtkUnstructuredGrid >  sp_grid, const std::string &  path  )

static

int main	(	int	argc,
		char *	argv[]
	)

Variable Documentation

niftk::CommandLineArgumentDescription g_opts[]

static

Initial value:

= {
    { OPT_SWITCH, "surf", 0, "Generate only a surface mesh" },
    { OPT_SWITCH, "separate", 0, "Generate one mesh from every label separately. If this flag is set, the output path (specified with the \"output\" flag) is treated as a prefix and the resulting meshes will receive a suffix based on the labels from which the mesh was generated." },
    { OPT_STRING, "output", "PATH TO OUTPUT FILE", "Output path (default: \"./out.vtk\" or \"./out\")" },
    { OPT_STRING, "labels", "LABEL VALUES", "Request sub-mesh with specific label value. Labels are specified as comma separated list LABEL1,LABEL2..,LABELN. If one mesh is to be generated from more than one label the corresponding labels need to be separated with semicolons (LABELP; ..; LABELQ), also the \"separate\" flag needs to be set."},
    { OPT_FLOAT, "facet-angle", "MIN. ADMISSIBLE FACET ANGLE", "Mesh quality criterion: min. admissible surface facet angle, in deg. (default: 30)." },
    { OPT_FLOAT, "facet-edge", "MAX. ADMISSIBLE FACET EDGE LEN.", "Mesh quality criterion: max. admissible surface facet edge length (default: 6)." },
    { OPT_FLOAT, "bdy-error", "MAX. ADMISSIBLE BDY APPROX. ERR", "Mesh quality criterion: max. admissible boundary approximation error (default: 4)." },
    { OPT_FLOAT, "cell-size", "MAX. ADMISSIBLE CELL SIZE", "Mesh quality criterion: max. admissible tetrahedron edge (default: 8)." },
    { OPT_FLOAT, "edge-radius", "MAX. EDGE-CIRCUMBALL-RADIUS RATIO", "Mesh quality criterion: max. admissible ratio of cell circumball radius-min. edge (default: 3)." },
    { OPT_STRING | OPT_LONELY | OPT_REQ, "LABEL VOLUME", "PATH TO INPUT LABEL VOL", "The input image." },
    { OPT_DONE, NULL, NULL, "Program to generate meshes from label volumes." }
}