itk::EulerAffineTransformMatrixAndItsVariations< TScalarType > Class Template Reference

Class to apply the affine transformation matrix to a 3D image. More...

Inheritance diagram for itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >:

Collaboration diagram for itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >:

Public Types
typedef EulerAffineTransformMatrixAndItsVariations	Self
typedef Object	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef itk::Size< 3 >	VolumeSizeType
typedef itk::EulerAffineTransform < double, 3, 3 >	EulerAffineTransformType
typedef EulerAffineTransformType::Pointer	EulerAffineTransformPointerType
typedef EulerAffineTransformType::ParametersType	EulerAffineTransformParametersType
typedef vnl_sparse_matrix < TScalarType >	SparseMatrixType
typedef vnl_matrix< TScalarType >	FullMatrixType
typedef vnl_vector< TScalarType >	VectorType
typedef EulerAffineTransformMatrixAndItsVariations	Self
typedef Object	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef itk::Size< 3 >	VolumeSizeType
typedef itk::EulerAffineTransform < double, 3, 3 >	EulerAffineTransformType
typedef EulerAffineTransformType::Pointer	EulerAffineTransformPointerType
typedef EulerAffineTransformType::ParametersType	EulerAffineTransformParametersType
typedef vnl_sparse_matrix < TScalarType >	SparseMatrixType
typedef vnl_matrix< TScalarType >	FullMatrixType
typedef vnl_vector< TScalarType >	VectorType

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetAffineTransform (EulerAffineTransformType *_arg)
virtual EulerAffineTransformType *	GetAffineTransform ()
void	SetVolumeSize (const VolumeSizeType &r)
	Set the volume size. More...
void	GetAffineTransformationSparseMatrix (SparseMatrixType &R, VolumeSizeType &inSize, EulerAffineTransformParametersType &parameters)
	Calculate and return the affine transformation matrix. More...
void	GetAffineTransformationSparseMatrixT (SparseMatrixType &R, SparseMatrixType &RTrans, VolumeSizeType &inSize)
	Calculate and return the transpose of the affine transformation matrix. More...
void	CalculteMatrixVectorMultiplication (SparseMatrixType &R, VectorType const &inputImageVector, VectorType &outputImageVector)
	Calculate and return the multiplication of the affine transformation matrix and image vector. More...
void	SetFDMDifference (const double &diffVal)
	Set the Finite Difference Method (FDM) difference value. More...
void	CalculteMatrixVectorGradient (VolumeSizeType &inSize, VectorType const &inputImageVector, VectorType &outputGradVector, EulerAffineTransformParametersType &parameters, unsigned int paraNum)
	Calculate and return the gradient vector of the affine transformation matrix per each parameter (using FDM) More...
void	CalculteMatrixVectorGradient (FullMatrixType &jacobianMatrix, VolumeSizeType &inSize, EulerAffineTransformParametersType &parameters)
	Calculate and return the gradient vector of the affine transformation matrix per each parameter (overloaded using Jacobian) More...
virtual const char *	GetClassName () const
virtual void	SetAffineTransform (EulerAffineTransformType *_arg)
virtual EulerAffineTransformType *	GetAffineTransform ()
void	SetVolumeSize (const VolumeSizeType &r)
	Set the volume size. More...
void	GetAffineTransformationSparseMatrix (SparseMatrixType &R, VolumeSizeType &inSize, EulerAffineTransformParametersType &parameters)
	Calculate and return the affine transformation matrix. More...
void	GetAffineTransformationSparseMatrixT (SparseMatrixType &R, SparseMatrixType &RTrans, VolumeSizeType &inSize)
	Calculate and return the transpose of the affine transformation matrix. More...
void	CalculteMatrixVectorMultiplication (SparseMatrixType &R, VectorType const &inputImageVector, VectorType &outputImageVector)
	Calculate and return the multiplication of the affine transformation matrix and image vector. More...
void	CalculteMatrixVectorGradient (VolumeSizeType &inSize, VectorType const &inputImageVector, VectorType &outputGradVector, EulerAffineTransformParametersType &parameters, unsigned int paraNum)
	Calculate and return the gradient vector of the affine transformation matrix per each parameter (using FDM) More...
void	CalculteMatrixVectorGradient (FullMatrixType &jacobianMatrix, VolumeSizeType &inSize, EulerAffineTransformParametersType &parameters)
	Calculate and return the gradient vector of the affine transformation matrix per each parameter (overloaded using Jacobian) More...

Static Public Member Functions
static Pointer	New ()
static Pointer	New ()

Protected Member Functions
	EulerAffineTransformMatrixAndItsVariations ()
virtual	~EulerAffineTransformMatrixAndItsVariations (void)
void	PrintSelf (std::ostream &os, Indent indent) const
	EulerAffineTransformMatrixAndItsVariations ()
virtual	~EulerAffineTransformMatrixAndItsVariations (void)
void	PrintSelf (std::ostream &os, Indent indent) const

Protected Attributes
VolumeSizeType	m_VolumeSize
	A pointer to the 3D volume size. More...
unsigned long int	m_input3DImageTotalSize
double	m_FDMDiffValue
	FDM difference value. More...
bool	m_FlagInitialised
	Flag indicating whether the object has been initialised. More...
FullMatrixType	m_affineCoreMatrix
VectorType	m_inputCoordinateVector
VectorType	m_outputCoordinateVector
EulerAffineTransformType::Pointer	m_AffineTransform
EulerAffineTransformType::JacobianType	m_JacobianArray
FullMatrixType	m_affineCoreMatrixInverse

Detailed Description

template<class TScalarType = double>
class itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >

Class to apply the affine transformation matrix to a 3D image.

Member Typedef Documentation

template<class TScalarType = double>

typedef SmartPointer<const Self> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::ConstPointer

template<class TScalarType = double>

typedef SmartPointer<const Self> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::ConstPointer

template<class TScalarType = double>

typedef EulerAffineTransformType::ParametersType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformParametersType

template<class TScalarType = double>

typedef EulerAffineTransformType::ParametersType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformParametersType

template<class TScalarType = double>

typedef EulerAffineTransformType::Pointer itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformPointerType

template<class TScalarType = double>

typedef EulerAffineTransformType::Pointer itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformPointerType

template<class TScalarType = double>

typedef itk::EulerAffineTransform<double, 3, 3> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformType

template<class TScalarType = double>

typedef itk::EulerAffineTransform<double, 3, 3> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformType

template<class TScalarType = double>

typedef vnl_matrix<TScalarType> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::FullMatrixType

template<class TScalarType = double>

typedef vnl_matrix<TScalarType> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::FullMatrixType

template<class TScalarType = double>

typedef SmartPointer<Self> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::Pointer

template<class TScalarType = double>

typedef SmartPointer<Self> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::Pointer

template<class TScalarType = double>

typedef EulerAffineTransformMatrixAndItsVariations itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::Self

Standard class typedefs.

template<class TScalarType = double>

typedef EulerAffineTransformMatrixAndItsVariations itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::Self

Standard class typedefs.

template<class TScalarType = double>

typedef vnl_sparse_matrix<TScalarType> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SparseMatrixType

Create a sparse matrix to store the affine transformation matrix coefficients

template<class TScalarType = double>

typedef vnl_sparse_matrix<TScalarType> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SparseMatrixType

Create a sparse matrix to store the affine transformation matrix coefficients

template<class TScalarType = double>

typedef Object itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::Superclass

template<class TScalarType = double>

typedef Object itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::Superclass

template<class TScalarType = double>

typedef vnl_vector<TScalarType> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::VectorType

template<class TScalarType = double>

typedef vnl_vector<TScalarType> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::VectorType

template<class TScalarType = double>

typedef itk::Size<3> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::VolumeSizeType

Some convenient typedefs.

template<class TScalarType = double>

typedef itk::Size<3> itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::VolumeSizeType

Some convenient typedefs.

Constructor & Destructor Documentation

template<class TScalarType = double>

itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformMatrixAndItsVariations ( )

protected

template<class TScalarType = double>

virtual itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::~EulerAffineTransformMatrixAndItsVariations ( void  )

inlineprotectedvirtual

template<class TScalarType = double>

itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::EulerAffineTransformMatrixAndItsVariations ( )

protected

template<class TScalarType = double>

virtual itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::~EulerAffineTransformMatrixAndItsVariations ( void  )

inlineprotectedvirtual

Member Function Documentation

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::CalculteMatrixVectorGradient	(	VolumeSizeType &	inSize,
		VectorType const &	inputImageVector,
		VectorType &	outputGradVector,
		EulerAffineTransformParametersType &	parameters,
		unsigned int	paraNum
	)

Calculate and return the gradient vector of the affine transformation matrix per each parameter (using FDM)

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::CalculteMatrixVectorGradient	(	FullMatrixType &	jacobianMatrix,
		VolumeSizeType &	inSize,
		EulerAffineTransformParametersType &	parameters
	)

Calculate and return the gradient vector of the affine transformation matrix per each parameter (overloaded using Jacobian)

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::CalculteMatrixVectorGradient	(	VolumeSizeType &	inSize,
		VectorType const &	inputImageVector,
		VectorType &	outputGradVector,
		EulerAffineTransformParametersType &	parameters,
		unsigned int	paraNum
	)

Calculate and return the gradient vector of the affine transformation matrix per each parameter (using FDM)

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::CalculteMatrixVectorGradient	(	FullMatrixType &	jacobianMatrix,
		VolumeSizeType &	inSize,
		EulerAffineTransformParametersType &	parameters
	)

Calculate and return the gradient vector of the affine transformation matrix per each parameter (overloaded using Jacobian)

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::CalculteMatrixVectorMultiplication	(	SparseMatrixType &	R,
		VectorType const &	inputImageVector,
		VectorType &	outputImageVector
	)

Calculate and return the multiplication of the affine transformation matrix and image vector.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::CalculteMatrixVectorMultiplication	(	SparseMatrixType &	R,
		VectorType const &	inputImageVector,
		VectorType &	outputImageVector
	)

Calculate and return the multiplication of the affine transformation matrix and image vector.

template<class TScalarType = double>

virtual EulerAffineTransformType* itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetAffineTransform ( )

virtual

Get the affine transformation

template<class TScalarType = double>

virtual EulerAffineTransformType* itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetAffineTransform ( )

virtual

Get the affine transformation

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetAffineTransformationSparseMatrix	(	SparseMatrixType &	R,
		VolumeSizeType &	inSize,
		EulerAffineTransformParametersType &	parameters
	)

Calculate and return the affine transformation matrix.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetAffineTransformationSparseMatrix	(	SparseMatrixType &	R,
		VolumeSizeType &	inSize,
		EulerAffineTransformParametersType &	parameters
	)

Calculate and return the affine transformation matrix.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetAffineTransformationSparseMatrixT	(	SparseMatrixType &	R,
		SparseMatrixType &	RTrans,
		VolumeSizeType &	inSize
	)

Calculate and return the transpose of the affine transformation matrix.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetAffineTransformationSparseMatrixT	(	SparseMatrixType &	R,
		SparseMatrixType &	RTrans,
		VolumeSizeType &	inSize
	)

Calculate and return the transpose of the affine transformation matrix.

template<class TScalarType = double>

virtual const char* itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class TScalarType = double>

virtual const char* itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class TScalarType = double>

static Pointer itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::New ( )

static

Method for creation through the object factory.

template<class TScalarType = double>

static Pointer itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::New ( )

static

Method for creation through the object factory.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class TScalarType = double>

virtual void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SetAffineTransform ( EulerAffineTransformType *  _arg )

virtual

Set the affine transformation

template<class TScalarType = double>

virtual void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SetAffineTransform ( EulerAffineTransformType *  _arg )

virtual

Set the affine transformation

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SetFDMDifference ( const double &  diffVal )

inline

Set the Finite Difference Method (FDM) difference value.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SetVolumeSize ( const VolumeSizeType &  r )

inline

Set the volume size.

template<class TScalarType = double>

void itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::SetVolumeSize ( const VolumeSizeType &  r )

inline

Set the volume size.

Member Data Documentation

template<class TScalarType = double>

FullMatrixType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_affineCoreMatrix

protected

The affin transform core matrix and its inverse matrix

template<class TScalarType = double>

FullMatrixType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_affineCoreMatrixInverse

protected

template<class TScalarType = double>

EulerAffineTransformType::Pointer itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_AffineTransform

protected

The affine transform

template<class TScalarType = double>

double itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_FDMDiffValue

protected

FDM difference value.

template<class TScalarType = double>

bool itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_FlagInitialised

protected

Flag indicating whether the object has been initialised.

template<class TScalarType = double>

unsigned long int itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_input3DImageTotalSize

protected

template<class TScalarType = double>

VectorType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_inputCoordinateVector

protected

The input and output coordinate vectors

template<class TScalarType = double>

EulerAffineTransformType::JacobianType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_JacobianArray

protected

template<class TScalarType = double>

VectorType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_outputCoordinateVector

protected

template<class TScalarType = double>

VolumeSizeType itk::EulerAffineTransformMatrixAndItsVariations< TScalarType >::m_VolumeSize

protected

A pointer to the 3D volume size.

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The documentation for this class was generated from the following file:

• Projection/itkEulerAffineTransformMatrixAndItsVariations.h