itk::IterativeReconstructionAndRegistrationMethod< IntensityType > Class Template Reference

Base class for iterative image reconstruction and registration methods. More...

Inheritance diagram for itk::IterativeReconstructionAndRegistrationMethod< IntensityType >:

Collaboration diagram for itk::IterativeReconstructionAndRegistrationMethod< IntensityType >:

Public Types
typedef IterativeReconstructionAndRegistrationMethod	Self
typedef ProcessObject	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef itk::ReconstructionAndRegistrationUpdateCommand	ReconstructionAndRegistrationUpdateCommandType
typedef ReconstructionAndRegistrationUpdateCommand::Pointer	ReconstructionAndRegistrationUpdateCommandPointer
typedef itk::ImageReconstructionMethod < IntensityType >	ImageReconstructionMethodType
	Define the reconstruction types. More...
typedef ImageReconstructionMethodType::Pointer	ImageReconstructionMethodPointer
typedef ImageReconstructionMethodType::InputProjectionVolumeType	InputProjectionVolumeType
typedef ImageReconstructionMethodType::ReconstructionType	ReconstructionType
typedef ReconstructionType::RegionType	ReconstructionRegionType
typedef ReconstructionType::SizeType	ReconstructionSizeType
typedef ReconstructionType::IndexType	ReconstructionIndexType
typedef ReconstructionType::SpacingType	ReconstructionSpacingType
typedef ReconstructionType::PointType	ReconstructionPointType
typedef ReconstructionType::Pointer	ReconstructionPointer
typedef ImageReconstructionMethodType::OptimizerType	ReconstructionOptimizerType
	Type of the optimizer. More...
typedef ReconstructionOptimizerType::Pointer	ReconstructionOptimizerPointer
typedef ImageReconstructionMethodType::MetricType	ReconstructionMetricType
	The type of the metric. More...
typedef ReconstructionMetricType::Pointer	ReconstructionMetricPointer
typedef ImageReconstructionMethodType::ProjectionGeometryType	ProjectionGeometryType
	The projection geometry type. More...
typedef ProjectionGeometryType::Pointer	ProjectionGeometryPointer
typedef itk::ImageRegistrationFilter < ReconstructionType, ReconstructionType, 3, double, float >	RegistrationFilterType
	Define the registration filter type. More...
typedef RegistrationFilterType::Pointer	ImageRegistrationFilterPointer
typedef RegistrationFilterType::TransformType	TransformType
typedef ReconstructionType	ReconstructionAndRegistrationOutputType
typedef ReconstructionAndRegistrationOutputType::Pointer	ReconstructionAndRegistrationOutputPointer
typedef ReconstructionAndRegistrationOutputType::ConstPointer	ReconstructionAndRegistrationOutputConstPointer
typedef DataObjectDecorator < TransformType >	TransformOutputType
typedef TransformOutputType::Pointer	TransformOutputPointer
typedef TransformOutputType::ConstPointer	TransformOutputConstPointer

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetRegistrationFilter (RegistrationFilterType *_arg)
virtual RegistrationFilterType *	GetRegistrationFilter ()
void	SetFlagUpdateReconEstimateWithAverage (bool flag)
bool	GetFlagUpdateReconEstimateWithAverage (void)
virtual void	SetReconstructionAndRegistrationUpdateCommand (ReconstructionAndRegistrationUpdateCommandType *_arg)
virtual ReconstructionAndRegistrationUpdateCommandType *	GetReconstructionAndRegistrationUpdateCommand ()
void	SetInputFixedImageProjections (InputProjectionVolumeType *imFixedProjections)
	Set the fixed image volume of projection images. More...
void	SetInputMovingImageProjections (InputProjectionVolumeType *imMovingProjections)
	Set the moving image volume of projection images. More...
void	SetFixedReconEstimate (ReconstructionType *im3D)
	Set the fixed image 3D reconstruction estimate volume. More...
void	SetMovingReconEstimate (ReconstructionType *im3D)
	Set the moving image 3D reconstruction estimate volume. More...
void	SetReconstructedVolumeSize (ReconstructionSizeType &reconSize)
	Set the size, resolution and origin of the reconstructed image. More...
void	SetReconstructedVolumeSpacing (ReconstructionSpacingType &reconSpacing)
void	SetReconstructedVolumeOrigin (ReconstructionPointType &reconOrigin)
void	SetProjectionGeometry (ProjectionGeometryType *geometry)
	Set the Projection Geometry. More...
void	SetFixedReconstructionMetric (ReconstructionMetricType *metric)
	Set the fixed image reconstruction metric. More...
void	SetMovingReconstructionMetric (ReconstructionMetricType *metric)
	Set the moving image reconstruction metric. More...
void	SetFixedReconstructionOptimizer (ReconstructionOptimizerType *optimizer)
	Set the fixed image reconstruction optimizer. More...
void	SetMovingReconstructionOptimizer (ReconstructionOptimizerType *optimizer)
	Set the moving image reconstruction optimizer. More...
void	SetNumberOfReconRegnIterations (unsigned int n)
	Set the number of combined registration-reconstruction iterations to perform. More...
void	GetNumberOfReconRegnIterations (void)
	Get the number of combined registration-reconstruction iterations to perform. More...
virtual void	Initialise () throw (ExceptionObject)
const ReconstructionType *	GetReconOutput (unsigned int output) const
const ReconstructionType *	GetFixedReconOutput (void) const
const ReconstructionType *	GetMovingReconOutput (void) const
const TransformType *	GetTransformationOutput (void) const
const ReconstructionAndRegistrationOutputType *	GetReconstructedVolume () const
void	GraftNthOutput (unsigned int idx, const itk::DataObject *graft)
	Graft an object onto the output of this class. More...
unsigned long	GetMTime () const

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	IterativeReconstructionAndRegistrationMethod ()
virtual	~IterativeReconstructionAndRegistrationMethod ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	GenerateOutputInformation ()
void	StartReconstructionAndRegistration (void)
void	StartOptimization (void)
void	GenerateData ()

Detailed Description

template<class IntensityType = double>
class itk::IterativeReconstructionAndRegistrationMethod< IntensityType >

Base class for iterative image reconstruction and registration methods.

This class defines the generic interface for an iterative image reconstruction and registration method.

This class is templated over the type of the images to be reconstructed and registered.

Member Typedef Documentation

template<class IntensityType = double>

typedef SmartPointer<const Self> itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ConstPointer

template<class IntensityType = double>

typedef ImageReconstructionMethodType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ImageReconstructionMethodPointer

template<class IntensityType = double>

typedef itk::ImageReconstructionMethod<IntensityType> itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ImageReconstructionMethodType

Define the reconstruction types.

template<class IntensityType = double>

typedef RegistrationFilterType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ImageRegistrationFilterPointer

template<class IntensityType = double>

typedef ImageReconstructionMethodType::InputProjectionVolumeType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumeType

template<class IntensityType = double>

typedef SmartPointer<Self> itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::Pointer

template<class IntensityType = double>

typedef ProjectionGeometryType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ProjectionGeometryPointer

template<class IntensityType = double>

typedef ImageReconstructionMethodType::ProjectionGeometryType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ProjectionGeometryType

The projection geometry type.

template<class IntensityType = double>

typedef ReconstructionAndRegistrationOutputType::ConstPointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionAndRegistrationOutputConstPointer

template<class IntensityType = double>

typedef ReconstructionAndRegistrationOutputType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionAndRegistrationOutputPointer

template<class IntensityType = double>

typedef ReconstructionType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionAndRegistrationOutputType

Type for the output: Using Decorator pattern for enabling the reconstructed volume to be passed in the data pipeline

template<class IntensityType = double>

typedef ReconstructionAndRegistrationUpdateCommand::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionAndRegistrationUpdateCommandPointer

template<class IntensityType = double>

typedef itk::ReconstructionAndRegistrationUpdateCommand itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionAndRegistrationUpdateCommandType

template<class IntensityType = double>

typedef ReconstructionType::IndexType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionIndexType

template<class IntensityType = double>

typedef ReconstructionMetricType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionMetricPointer

template<class IntensityType = double>

typedef ImageReconstructionMethodType::MetricType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionMetricType

The type of the metric.

template<class IntensityType = double>

typedef ReconstructionOptimizerType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionOptimizerPointer

template<class IntensityType = double>

typedef ImageReconstructionMethodType::OptimizerType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionOptimizerType

Type of the optimizer.

template<class IntensityType = double>

typedef ReconstructionType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionPointer

template<class IntensityType = double>

typedef ReconstructionType::PointType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionPointType

template<class IntensityType = double>

typedef ReconstructionType::RegionType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionRegionType

template<class IntensityType = double>

typedef ReconstructionType::SizeType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionSizeType

template<class IntensityType = double>

typedef ReconstructionType::SpacingType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionSpacingType

template<class IntensityType = double>

typedef ImageReconstructionMethodType::ReconstructionType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::ReconstructionType

template<class IntensityType = double>

typedef itk::ImageRegistrationFilter<ReconstructionType, ReconstructionType, 3, double, float> itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::RegistrationFilterType

Define the registration filter type.

template<class IntensityType = double>

typedef IterativeReconstructionAndRegistrationMethod itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::Self

Standard class typedefs.

template<class IntensityType = double>

typedef ProcessObject itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::Superclass

template<class IntensityType = double>

typedef TransformOutputType::ConstPointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::TransformOutputConstPointer

template<class IntensityType = double>

typedef TransformOutputType::Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::TransformOutputPointer

template<class IntensityType = double>

typedef DataObjectDecorator< TransformType > itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::TransformOutputType

Type for the output: Using Decorator pattern for enabling the Transform to be passed in the data pipeline

template<class IntensityType = double>

typedef RegistrationFilterType::TransformType itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::TransformType

Constructor & Destructor Documentation

template<class IntensityType = double>

itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::IterativeReconstructionAndRegistrationMethod ( )

protected

template<class IntensityType = double>

virtual itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::~IterativeReconstructionAndRegistrationMethod ( )

inlineprotectedvirtual

Member Function Documentation

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GenerateData ( )

protected

Method invoked by the pipeline in order to trigger the computation of the reconstruction.

template<class IntensityType = double>

virtual void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GenerateOutputInformation ( )

inlineprotectedvirtual

We avoid propagating the input region to the output by overloading this function

template<class IntensityType = double>

virtual const char* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class IntensityType = double>

const ReconstructionType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetFixedReconOutput ( void  ) const

inline

Returns the result of the fixed image reconstruction

template<class IntensityType = double>

bool itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetFlagUpdateReconEstimateWithAverage ( void  )

inline

template<class IntensityType = double>

const ReconstructionType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetMovingReconOutput ( void  ) const

inline

Returns the result of the moving image reconstruction

template<class IntensityType = double>

unsigned long itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetMTime

(

)

const

Method to return the latest modified time of this object or any of its cached ivars

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetNumberOfReconRegnIterations ( void  )

inline

Get the number of combined registration-reconstruction iterations to perform.

template<class IntensityType = double>

const ReconstructionType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetReconOutput

(

unsigned int

output

)

const

Returns the result of the image reconstruction

template<class IntensityType = double>

const ReconstructionAndRegistrationOutputType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetReconstructedVolume

(

)

const

Returns the image resulting from the reconstruction process

template<class IntensityType = double>

virtual ReconstructionAndRegistrationUpdateCommandType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetReconstructionAndRegistrationUpdateCommand ( )

virtual

template<class IntensityType = double>

virtual RegistrationFilterType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetRegistrationFilter ( )

virtual

template<class IntensityType = double>

const TransformType* itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GetTransformationOutput

(

void

)

const

Returns the transformation

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::GraftNthOutput	(	unsigned int	idx,
		const itk::DataObject *	graft
	)

Graft an object onto the output of this class.

template<class IntensityType = double>

virtual void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::Initialise ( ) throw ( ExceptionObject )

virtual

Initialise by setting the interconnects between the components.

template<class IntensityType = double>

static Pointer itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::New ( )

static

Method for creation through the object factory.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetFixedReconEstimate

(

ReconstructionType *

im3D

)

Set the fixed image 3D reconstruction estimate volume.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetFixedReconstructionMetric ( ReconstructionMetricType *  metric )

inline

Set the fixed image reconstruction metric.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetFixedReconstructionOptimizer ( ReconstructionOptimizerType *  optimizer )

inline

Set the fixed image reconstruction optimizer.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetFlagUpdateReconEstimateWithAverage ( bool  flag )

inline

Set/Get the 'update 3D reconstruction estimate volume with average' flag

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetInputFixedImageProjections

(

InputProjectionVolumeType *

imFixedProjections

)

Set the fixed image volume of projection images.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetInputMovingImageProjections

(

InputProjectionVolumeType *

imMovingProjections

)

Set the moving image volume of projection images.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetMovingReconEstimate

(

ReconstructionType *

im3D

)

Set the moving image 3D reconstruction estimate volume.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetMovingReconstructionMetric ( ReconstructionMetricType *  metric )

inline

Set the moving image reconstruction metric.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetMovingReconstructionOptimizer ( ReconstructionOptimizerType *  optimizer )

inline

Set the moving image reconstruction optimizer.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetNumberOfReconRegnIterations ( unsigned int  n )

inline

Set the number of combined registration-reconstruction iterations to perform.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetProjectionGeometry ( ProjectionGeometryType *  geometry )

inline

Set the Projection Geometry.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetReconstructedVolumeOrigin

(

ReconstructionPointType &

reconOrigin

)

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetReconstructedVolumeSize

(

ReconstructionSizeType &

reconSize

)

Set the size, resolution and origin of the reconstructed image.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetReconstructedVolumeSpacing

(

ReconstructionSpacingType &

reconSpacing

)

template<class IntensityType = double>

virtual void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetReconstructionAndRegistrationUpdateCommand ( ReconstructionAndRegistrationUpdateCommandType *  _arg )

virtual

Set/Get the ReconstructionAndRegistrationUpdateCommand.

template<class IntensityType = double>

virtual void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::SetRegistrationFilter ( RegistrationFilterType *  _arg )

virtual

Set/Get the ImageRegistrationFilter.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::StartOptimization ( void  )

protected

Method that initiates the optimization process. This method should not be called directly by the users. Instead, this method is intended to be invoked internally by the StartReconstructionAndRegistration() which is in turn invoked by the Update() method.

template<class IntensityType = double>

void itk::IterativeReconstructionAndRegistrationMethod< IntensityType >::StartReconstructionAndRegistration ( void  )

protected

Method that initiates the reconstruction and registration. This will ensure that all inputs the method needs are in place, via a call to Initialise() and will then start the optimization process via a call to StartOptimization()

---

The documentation for this class was generated from the following file:

• itkIterativeReconstructionAndRegistrationMethod.h