itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions > Class Template Reference

Composite filter to implement Jones et. al. Human Brain Mapping 2005 11:12-32(2000). More...

Inheritance diagram for itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >:

Collaboration diagram for itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >:

Public Types
typedef JonesThicknessFilter	Self
typedef ImageToImageFilter < TImageType, TImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef CheckForThreeLevelsFilter < TImageType >	CheckFilterType
typedef CheckFilterType::Pointer	CheckFilterPointer
typedef LaplacianSolverImageFilter < TImageType, TScalarType >	LaplaceFilterType
typedef LaplaceFilterType::Pointer	LaplaceFilterPointer
typedef ScalarImageToNormalizedGradientVectorImageFilter < TImageType, TScalarType >	NormalsFilterType
typedef NormalsFilterType::Pointer	NormalsFilterPointer
typedef IntegrateStreamlinesFilter < TImageType, TScalarType, NDimensions >	IntegrateFilterType
typedef IntegrateFilterType::Pointer	IntegrateFilterPointer
typedef NormalsFilterType::OutputImageType	VectorNormalImageType
typedef VectorNormalImageType::Pointer	VectorNormalImagePointer
typedef LaplaceFilterType::OutputImageType	LaplacianImageType

Public Member Functions
virtual const char *	GetClassName () const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	SetLowVoltage (TScalarType _arg)
virtual TScalarType	GetLowVoltage ()
virtual void	SetHighVoltage (TScalarType _arg)
virtual TScalarType	GetHighVoltage ()
virtual void	SetLaplaceEpsionRatio (TScalarType _arg)
virtual TScalarType	GetLaplaceEpsionRatio ()
virtual void	SetLaplaceMaxIterations (unsigned long int _arg)
virtual unsigned long int	GetLaplaceMaxIterations ()
virtual void	SetWhiteMatterLabel (short int _arg)
virtual short int	GetWhiteMatterLabel ()
virtual void	SetGreyMatterLabel (short int _arg)
virtual short int	GetGreyMatterLabel ()
virtual void	SetCSFMatterLabel (short int _arg)
virtual short int	GetCSFMatterLabel ()
virtual void	SetMinimumStepSize (TScalarType _arg)
virtual TScalarType	GetMinimumStepSize ()
virtual void	SetMaximumLength (TScalarType _arg)
virtual TScalarType	GetMaximumLength ()
virtual void	SetSigma (TScalarType _arg)
virtual TScalarType	GetSigma ()
virtual void	SetUseLabels (bool _arg)
virtual bool	GetUseLabels ()
virtual void	SetUseSmoothing (bool _arg)
virtual bool	GetUseSmoothing ()
void	SetVectorNormalsOverrideImage (VectorNormalImageType *v)
VectorNormalImageType *	GetVectorNormalsOverrideImage ()
VectorNormalImageType *	GetVectorNormalsFilterImage ()
LaplacianImageType *	GetLaplacianFilterImage ()

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	JonesThicknessFilter ()
virtual	~JonesThicknessFilter ()
virtual void	GenerateData ()

Detailed Description

template<typename TImageType, typename TScalarType, unsigned int NDimensions>
class itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >

Composite filter to implement Jones et. al. Human Brain Mapping 2005 11:12-32(2000).

See also

CheckForThreeLevelsFilter

LaplacianSolverImageFilter

LaplacianSolverImageFilter

GaussianSmoothVectorFieldFilter

IntegrateStreamlinesFilter

Member Typedef Documentation

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef CheckFilterType::Pointer itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::CheckFilterPointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef CheckForThreeLevelsFilter<TImageType> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::CheckFilterType

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef SmartPointer<const Self> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::ConstPointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef IntegrateFilterType::Pointer itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::IntegrateFilterPointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef IntegrateStreamlinesFilter<TImageType, TScalarType, NDimensions> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::IntegrateFilterType

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef LaplaceFilterType::Pointer itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::LaplaceFilterPointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef LaplacianSolverImageFilter<TImageType, TScalarType> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::LaplaceFilterType

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef LaplaceFilterType::OutputImageType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::LaplacianImageType

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef NormalsFilterType::Pointer itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::NormalsFilterPointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef ScalarImageToNormalizedGradientVectorImageFilter<TImageType, TScalarType> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::NormalsFilterType

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef SmartPointer<Self> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::Pointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef JonesThicknessFilter itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::Self

Standard class typedefs.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef ImageToImageFilter<TImageType, TImageType> itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::Superclass

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef VectorNormalImageType::Pointer itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::VectorNormalImagePointer

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

typedef NormalsFilterType::OutputImageType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::VectorNormalImageType

Constructor & Destructor Documentation

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::JonesThicknessFilter ( )

protected

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::~JonesThicknessFilter ( )

inlineprotectedvirtual

Member Function Documentation

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GenerateData ( )

protectedvirtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual const char* itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetClassName ( ) const

virtual

Runtime information support.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual short int itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetCSFMatterLabel ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual short int itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetGreyMatterLabel ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual TScalarType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetHighVoltage ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual TScalarType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetLaplaceEpsionRatio ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual unsigned long int itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetLaplaceMaxIterations ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

LaplacianImageType* itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetLaplacianFilterImage

(

)

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual TScalarType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetLowVoltage ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual TScalarType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetMaximumLength ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual TScalarType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetMinimumStepSize ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual TScalarType itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetSigma ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual bool itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetUseLabels ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual bool itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetUseSmoothing ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

VectorNormalImageType* itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetVectorNormalsFilterImage

(

)

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

VectorNormalImageType* itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetVectorNormalsOverrideImage

(

)

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual short int itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::GetWhiteMatterLabel ( )

virtual

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

static Pointer itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::New ( )

static

Method for creation through the object factory.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

Print internal ivars

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetCSFMatterLabel ( short int  _arg )

virtual

Set/Get the CSF matter label. Defaults to 2.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetGreyMatterLabel ( short int  _arg )

virtual

Set/Get the grey matter label. Defaults to 2.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetHighVoltage ( TScalarType  _arg )

virtual

Set/Get the high voltage, or high potential mentioned in paper. Defaults to 10000.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetLaplaceEpsionRatio ( TScalarType  _arg )

virtual

Set/Get the epsilon convergence tolerance. Defaults to 0.00001.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetLaplaceMaxIterations ( unsigned long int  _arg )

virtual

Set/Get the maximum number of iterations. Defaults to 200.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetLowVoltage ( TScalarType  _arg )

virtual

Set/Get the low voltage, or low potential mentioned in paper. Defaults to 0.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetMaximumLength ( TScalarType  _arg )

virtual

Set/Get the maximum length for ray casting. Stops the iterations going on for ever. Defaults to 10

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetMinimumStepSize ( TScalarType  _arg )

virtual

Set/Get the minimum step size. Defaults to 0.1.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetSigma ( TScalarType  _arg )

virtual

Set/Get the sigma for Gaussian smoothing of vector normals. Defaults to 0. ie. OFF

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetUseLabels ( bool  _arg )

virtual

Set/Get UseLabels flag. If true, we iterate towards the average of the segmentation labels. If false, we iterate towards the potential boundaries (0,10000). Defaults to false as per Jones paper.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetUseSmoothing ( bool  _arg )

virtual

Set/Get the flag to determine if we are smoothing vector normals.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetVectorNormalsOverrideImage

(

VectorNormalImageType *

v

)

Set a pointer to an image of vector normals. If set, we use this instead.

template<typename TImageType , typename TScalarType , unsigned int NDimensions>

virtual void itk::JonesThicknessFilter< TImageType, TScalarType, NDimensions >::SetWhiteMatterLabel ( short int  _arg )

virtual

Set/Get the white matter label. Defaults to 1.

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The documentation for this class was generated from the following file:

• itkJonesThicknessFilter.h