NifTK
16.4.1 - 0798f20
CMIC's Translational Medical Imaging Platform
|
Framework for creating images in a multi-resolution pyramid. More...
Public Types | |
typedef UCLMultiResolutionPyramidImageFilter | Self |
typedef ImageToImageFilter < TInputImage, TOutputImage > | Superclass |
typedef SmartPointer< Self > | Pointer |
typedef SmartPointer< const Self > | ConstPointer |
typedef Array2D< TScheduleElement > | ScheduleType |
typedef Superclass::InputImageType | InputImageType |
typedef Superclass::OutputImageType | OutputImageType |
typedef Superclass::InputImagePointer | InputImagePointer |
typedef Superclass::OutputImagePointer | OutputImagePointer |
typedef Superclass::InputImageConstPointer | InputImageConstPointer |
Public Member Functions | |
virtual const char * | GetClassName () const |
itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension) | |
itkStaticConstMacro (OutputImageDimension, unsigned int, TOutputImage::ImageDimension) | |
virtual void | SetNumberOfLevels (unsigned int num) |
virtual unsigned int | GetNumberOfLevels () const |
virtual void | SetSchedule (const ScheduleType &schedule) |
virtual const ScheduleType & | GetSchedule () |
virtual void | SetStartingShrinkFactors (TScheduleElement factor) |
virtual void | SetStartingShrinkFactors (TScheduleElement *factors) |
const unsigned int * | GetStartingShrinkFactors () const |
virtual void | GenerateOutputInformation () |
virtual void | GenerateOutputRequestedRegion (DataObject *output) |
virtual void | GenerateInputRequestedRegion () |
virtual void | SetMaximumError (double _arg) |
virtual const double & | GetMaximumError () |
virtual void | SetUseShrinkImageFilter (bool _arg) |
virtual bool | GetUseShrinkImageFilter () const |
virtual void | UseShrinkImageFilterOn () |
virtual void | UseShrinkImageFilterOff () |
Static Public Member Functions | |
static Pointer | New () |
static bool | IsScheduleDownwardDivisible (const ScheduleType &schedule) |
Protected Member Functions | |
UCLMultiResolutionPyramidImageFilter () | |
~UCLMultiResolutionPyramidImageFilter () | |
void | PrintSelf (std::ostream &os, Indent indent) const |
void | GenerateData () |
Protected Attributes | |
double | m_MaximumError |
unsigned int | m_NumberOfLevels |
ScheduleType | m_Schedule |
bool | m_UseShrinkImageFilter |
Framework for creating images in a multi-resolution pyramid.
Originally copied from ITK. Adapted to allow non-integer levels.
UCLMultiResolutionPyramidImageFilter provides a generic framework to to create a image pryamid according to a user defined multi-resolution schedule.
The multi-resolution schedule is specified in terms for shrink factors at each multi-resolution level for each dimension.
A user can either use the default schedules or specify each factor in the schedules directly.
The schedule is stored as an unsigned int matrix. An element of the table can be access via the double bracket notation: table[resLevel][dimension]
For example: 8 4 4 4 4 2
is a schedule for two computation level. In the first (coarest) level the image is reduce by a factor of 8 in the column dimension, factor of 4 in the row dimension and factor of 4 in the slice dimension. In the second level, the image is reduce by a factor of 4 in the column dimension, 4 is the row dimension and 2 in the slice dimension.
The method SetNumberOfLevels() set the number of computation levels in the pyramid. This method will allocate memory for the multi-resolution schedule table. This method generates defaults tables with the starting shrink factor for all dimension set to 2^(NumberOfLevel - 1). All factors are halved for all subsequent levels. For example if the number of levels was set to 4, the default table is:
8 8 8 4 4 4 2 2 2 1 1 1
The user can get a copy of the schedule via GetSchedule() They may make alteration and reset it using SetSchedule().
A user can create a default table by specifying the starting shrink factors via methods SetStartingShrinkFactors() The factors for subsequent level is generated by halving the factor or setting to one, depending on which is larger.
For example, for 4 levels and starting factors of 8,8,4 the default table would be:
8 8 4 4 4 2 2 2 1 1 1 1
When this filter is updated, NumberOfLevels outputs are produced. The N'th output correspond to the N'th level of the pyramid.
To generate each output image, Gaussian smoothing is first performed using a DiscreteGaussianImageFilter with variance (shrink factor / 2)^2. The smoothed image is then downsampled using a ResampleImageFilter.
Note that even if the shrink factors are all equal to one, a smoothing will still be applied. The output at the finest level of the pyramid will thus typically be a smoothed version of the input.
This class is templated over the input image type and the output image type.
This filter uses multithreaded filters to perform the smoothing and downsampling.
This filter supports streaming.
typedef SmartPointer<const Self> itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::ConstPointer |
typedef Superclass::InputImageConstPointer itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::InputImageConstPointer |
typedef Superclass::InputImagePointer itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::InputImagePointer |
typedef Superclass::InputImageType itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::InputImageType |
Inherit types from Superclass.
typedef Superclass::OutputImagePointer itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::OutputImagePointer |
typedef Superclass::OutputImageType itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::OutputImageType |
typedef SmartPointer<Self> itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::Pointer |
typedef Array2D<TScheduleElement> itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::ScheduleType |
ScheduleType typedef support.
typedef UCLMultiResolutionPyramidImageFilter itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::Self |
Standard class typedefs.
typedef ImageToImageFilter<TInputImage,TOutputImage> itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::Superclass |
|
protected |
|
inlineprotected |
|
protected |
Generate the output data.
|
virtual |
UCLMultiResolutionPyramidImageFilter requires a larger input requested region than the output requested regions to accomdate the shrinkage and smoothing operations. As such, UCLMultiResolutionPyramidImageFilter needs to provide an implementation for GenerateInputRequestedRegion(). The original documentation of this method is below.
Reimplemented in itk::UCLRecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >.
|
virtual |
UCLMultiResolutionPyramidImageFilter produces images which are of different resolution and different pixel spacing than its input image. As such, UCLMultiResolutionPyramidImageFilter needs to provide an implementation for GenerateOutputInformation() in order to inform the pipeline execution model. The original documentation of this method is below.
|
virtual |
Given one output whose requested region has been set, this method sets the requested region for the remaining output images. The original documentation of this method is below.
Reimplemented in itk::UCLRecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >.
|
virtual |
Run-time type information (and related methods).
Reimplemented in itk::UCLRecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >.
|
virtual |
|
virtual |
Get the number of multi-resolution levels.
|
virtual |
Get the multi-resolution schedule.
const unsigned int* itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::GetStartingShrinkFactors | ( | ) | const |
Get the starting shrink factors
|
virtual |
|
static |
Test if the schedule is downward divisible. This method returns true if at every level, the shrink factors are divisble by the shrink factors at the next level.
itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::itkStaticConstMacro | ( | ImageDimension | , |
unsigned | int, | ||
TInputImage::ImageDimension | |||
) |
ImageDimension enumeration.
itk::UCLMultiResolutionPyramidImageFilter< TInputImage, TOutputImage, TScheduleElement >::itkStaticConstMacro | ( | OutputImageDimension | , |
unsigned | int, | ||
TOutputImage::ImageDimension | |||
) |
|
static |
Method for creation through the object factory.
|
protected |
|
virtual |
|
virtual |
Set the number of multi-resolution levels. The matrix containing the schedule will be resized accordingly. The schedule is populated with default values. At the coarset (0) level, the shrink factors are set 2^(nlevel - 1) for all dimension. These shrink factors are halved for subsequent levels. The number of levels is clamped to a minimum value of 1. All shrink factors are also clamped to a minimum value of 1.
|
virtual |
Set a multi-resolution schedule. The input schedule must have only ImageDimension number of columns and NumberOfLevels number of rows. For each dimension, the shrink factor must be non-increasing with respect to subsequent levels. This function will clamp shrink factors to satisify this condition. All shrink factors less than one will also be clamped to the value of 1.
|
virtual |
Set the starting shrink factor for the coarset (0) resolution level. The schedule is then populated with defaults values obtained by halving the factors at the previous level. All shrink factors are clamped to a minimum value of 1.
|
virtual |
|
virtual |
|
virtual |
|
virtual |
|
protected |
|
protected |
|
protected |
|
protected |