A specific implementation of GeneralSegmentorPipelineInterface, based on ITK, called from MITK. More...

Inheritance diagram for niftk::GeneralSegmentorPipeline< TPixel, VImageDimension >:

Collaboration diagram for niftk::GeneralSegmentorPipeline< TPixel, VImageDimension >:

Public Types
typedef itk::Index < VImageDimension >	IndexType

typedef itk::ContinuousIndex < double, VImageDimension >	ContinuousIndexType

typedef itk::Image< TPixel, VImageDimension >	GreyScaleImageType

typedef itk::Image < mitk::Tool::DefaultSegmentationDataType, VImageDimension >	SegmentationImageType

typedef SegmentationImageType::PixelType	SegmentationImagePixelType

typedef GreyScaleImageType::RegionType	RegionType

typedef GreyScaleImageType::SizeType	SizeType

typedef GreyScaleImageType::PointType	PointType

typedef itk::ExtractImageFilter < GreyScaleImageType, GreyScaleImageType >	ExtractGreySliceFromGreyImageFilterType

typedef ExtractGreySliceFromGreyImageFilterType::Pointer	ExtractGreySliceFromGreyImageFilterPointer

typedef itk::ExtractImageFilter < SegmentationImageType, SegmentationImageType >	ExtractBinarySliceFromBinaryImageFilterType

typedef ExtractBinarySliceFromBinaryImageFilterType::Pointer	ExtractBinarySliceFromBinaryImageFilterPointer

typedef itk::CastImageFilter < GreyScaleImageType, SegmentationImageType >	CastGreySliceToSegmentationSliceFilterType

typedef CastGreySliceToSegmentationSliceFilterType::Pointer	CastGreySliceToSegmentationSliceFilterPointer

typedef itk::MIDASRegionGrowingImageFilter < GreyScaleImageType, SegmentationImageType, itk::PointSet< float, 3 > >	MIDASRegionGrowingFilterType

typedef MIDASRegionGrowingFilterType::Pointer	MIDASRegionGrowingFilterPointer

Public Types inherited from niftk::GeneralSegmentorPipelineInterface
typedef itk::PointSet< float, 3 >	PointSetType

typedef PointSetType::Pointer	PointSetPointer

typedef PointSetType::PointType	PointSetPointType

typedef itk::PolyLineParametricPath< 3 >	ParametricPathType

typedef std::vector < ParametricPathType::Pointer >	ParametricPathVectorType

typedef ParametricPathType::VertexListType	ParametricPathVertexListType

typedef ParametricPathType::VertexType	ParametricPathVertexType

Public Member Functions
	GeneralSegmentorPipeline ()

virtual	~GeneralSegmentorPipeline ()

void	SetParam (const GreyScaleImageType referenceImage, SegmentationImageType segmentationImage, GeneralSegmentorPipelineParams &params)

void	Update (GeneralSegmentorPipelineParams &params)

void	DisconnectPipeline ()
	Disconnects the pipeline so that reference counts go to zero for the input image. More...

Public Member Functions inherited from niftk::GeneralSegmentorPipelineInterface
virtual	~GeneralSegmentorPipelineInterface ()

Additional Inherited Members
Protected Member Functions inherited from niftk::GeneralSegmentorPipelineInterface
	GeneralSegmentorPipelineInterface ()

Detailed Description

template<typename TPixel, unsigned int VImageDimension>
class niftk::GeneralSegmentorPipeline< TPixel, VImageDimension >

A specific implementation of GeneralSegmentorPipelineInterface, based on ITK, called from MITK.

The input images are 3D, and the contours from the DrawTool and PolyTool are in 3D, with coordinates in millimetres. This pipeline basically extracts 2D slices, and performs 2D region growing, providing the blue outline images seen within the GUI.