niftkDynamicContrastEnhancementAnalysis.cxx File Reference

Include dependency graph for niftkDynamicContrastEnhancementAnalysis.cxx:

Classes
struct	arguments

Enumerations
enum	{   O_DEBUG = 0, O_VERBOSE, O_MIN_NUMBER_OF_SLICES, O_MASK,   O_OUTPUT_MAX, O_OUTPUT_AUC, O_OUTPUT_MAX_RATE, O_OUTPUT_TIME2MAX,   O_OUTPUT_WASH_OUT, O_INPUT_IMAGES, O_MORE }

Functions
template<int Dimension, class PixelType >
itk::Image< float, Dimension > ::Pointer	RescaleImage (typename itk::Image< PixelType, Dimension >::Pointer image)
template<int Dimension, class PixelType >
int	DoMain (arguments args)
int	main (int argc, char *argv[])

Variables
struct niftk::CommandLineArgumentDescription	clArgList []

Enumeration Type Documentation

anonymous enum

Enumerator
O_DEBUG
O_VERBOSE
O_MIN_NUMBER_OF_SLICES
O_MASK
O_OUTPUT_MAX
O_OUTPUT_AUC
O_OUTPUT_MAX_RATE
O_OUTPUT_TIME2MAX
O_OUTPUT_WASH_OUT
O_INPUT_IMAGES
O_MORE

Function Documentation

template<int Dimension, class PixelType >

int DoMain

(

arguments

args

)

int main	(	int	argc,
		char *	argv[]
	)

template<int Dimension, class PixelType >

itk::Image< float, Dimension >::Pointer RescaleImage

(

typename itk::Image< PixelType, Dimension >::Pointer

image

)

Variable Documentation

struct niftk::CommandLineArgumentDescription clArgList[]

Initial value:

= {

  {OPT_SWITCH, "dbg", 0, "Output debugging information."},
  {OPT_SWITCH, "v", 0,   "Verbose output during execution."},

  {OPT_INT, "minNumSlices", "nSlices", 
   "The minimum number of slices in the DCE time series volumes [10]."},

  {OPT_STRING, "mask", "filename", "An optional mask image."},

  {OPT_STRING, "oMax",      "filename", "The output maximum enhancement image (subtracted)."},
  {OPT_STRING, "oAUC",      "filename", "The output area under the contrast curve (subtracted)."},
  {OPT_STRING, "oMaxRate",  "filename", "The output maximum enhancement rate image."},
  {OPT_STRING, "oTime2Max", "filename", "The output time to maximum enhancement image."},
  {OPT_STRING, "oWashOut",  "filename", "The output contrast maximum wash out rate image."},

  {OPT_STRING|OPT_LONELY|OPT_REQ, NULL, "images", "The input images."},
  {OPT_MORE, NULL, "...", NULL},
  
  {OPT_DONE, NULL, NULL, 
   "Program to analyse a set of dynamic contrast enhancement images.\n"
  }
}