itk::BrainMaskFromCTFilter< TInputImage, TOutputImage > Class Template Reference

Filter to extract the brain from a CT image. Optionally, the filter can receive a T1 image, co-registered with the CT, to improve the brain extraction. More...

Inheritance diagram for itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >:

Public Types
typedef BrainMaskFromCTFilter	Self
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::InputImageType	InputImageType
typedef Superclass::OutputImageType	OutputImageType
typedef Superclass::InputImagePointer	InputImagePointer
typedef Superclass::OutputImagePointer	OutputImagePointer
typedef Superclass::InputImageConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputPixelType
typedef OutputImageType::PixelType	OutputPixelType

Public Member Functions
virtual const char *	GetClassName () const
	itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension)
virtual void	CheckHounsFieldUnitsOn ()
virtual void	CheckHounsFieldUnitsOff ()
virtual bool	GetCheckHounsFieldUnits () const
virtual void	SetCheckHounsFieldUnits (bool _arg)
virtual void	IsHUOn ()
virtual void	IsHUOff ()
virtual bool	GetIsHU () const
virtual void	SetIsHU (bool _arg)

Static Public Member Functions
static Pointer	New ()

Protected Types
typedef itk::BinaryThresholdImageFilter < InputImageType, OutputImageType >	ThreshFilterType
typedef itk::ConnectedComponentImageFilter < OutputImageType, OutputImageType >	ConnectFilterType
typedef itk::LabelShapeKeepNObjectsImageFilter < OutputImageType >	LabelShapeKeepNObjectsImageFilterType
typedef itk::OtsuThresholdImageFilter < InputImageType, OutputImageType >	OtsuFilterType
typedef itk::ImageDuplicator < OutputImageType >	DuplicatorType
typedef itk::MaskImageFilter < OutputImageType, OutputImageType >	MaskFilterType
typedef itk::BinaryBallStructuringElement < OutputPixelType, ImageDimension >	StructuringElementType
typedef itk::BinaryDilateImageFilter < OutputImageType, OutputImageType, StructuringElementType >	DilateFilter
typedef itk::BinaryCrossStructuringElement < OutputPixelType, ImageDimension >	CrossType
typedef itk::BinaryDilateImageFilter < OutputImageType, OutputImageType, CrossType >	DilateCrossFilterType
typedef itk::BinaryErodeImageFilter < OutputImageType, OutputImageType, StructuringElementType >	ErodeFilterType

Protected Member Functions
	BrainMaskFromCTFilter ()
	~BrainMaskFromCTFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	GenerateData ()

Protected Attributes
bool	m_CheckHounsFieldUnits
bool	m_IsHU

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >

Filter to extract the brain from a CT image. Optionally, the filter can receive a T1 image, co-registered with the CT, to improve the brain extraction.

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef itk::ConnectedComponentImageFilter<OutputImageType, OutputImageType> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::ConnectFilterType

protected

template<class TInputImage , class TOutputImage >

typedef SmartPointer<const Self> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::ConstPointer

template<class TInputImage , class TOutputImage >

typedef itk::BinaryCrossStructuringElement<OutputPixelType, ImageDimension> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::CrossType

protected

template<class TInputImage , class TOutputImage >

typedef itk::BinaryDilateImageFilter<OutputImageType, OutputImageType, CrossType> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::DilateCrossFilterType

protected

template<class TInputImage , class TOutputImage >

typedef itk::BinaryDilateImageFilter<OutputImageType, OutputImageType, StructuringElementType> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::DilateFilter

protected

template<class TInputImage , class TOutputImage >

typedef itk::ImageDuplicator< OutputImageType > itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::DuplicatorType

protected

template<class TInputImage , class TOutputImage >

typedef itk::BinaryErodeImageFilter<OutputImageType, OutputImageType, StructuringElementType> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::ErodeFilterType

protected

template<class TInputImage , class TOutputImage >

typedef Superclass::InputImageConstPointer itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::InputImageConstPointer

template<class TInputImage , class TOutputImage >

typedef Superclass::InputImagePointer itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::InputImagePointer

template<class TInputImage , class TOutputImage >

typedef Superclass::InputImageType itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::InputImageType

Inherit types from Superclass.

template<class TInputImage , class TOutputImage >

typedef InputImageType::PixelType itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::InputPixelType

template<class TInputImage , class TOutputImage >

typedef itk::LabelShapeKeepNObjectsImageFilter< OutputImageType > itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::LabelShapeKeepNObjectsImageFilterType

protected

template<class TInputImage , class TOutputImage >

typedef itk::MaskImageFilter< OutputImageType, OutputImageType > itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::MaskFilterType

protected

template<class TInputImage , class TOutputImage >

typedef itk::OtsuThresholdImageFilter<InputImageType, OutputImageType> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::OtsuFilterType

protected

template<class TInputImage , class TOutputImage >

typedef Superclass::OutputImagePointer itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::OutputImagePointer

template<class TInputImage , class TOutputImage >

typedef Superclass::OutputImageType itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::OutputImageType

template<class TInputImage , class TOutputImage >

typedef OutputImageType::PixelType itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::OutputPixelType

template<class TInputImage , class TOutputImage >

typedef SmartPointer<Self> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::Pointer

template<class TInputImage , class TOutputImage >

typedef BrainMaskFromCTFilter itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

template<class TInputImage , class TOutputImage >

typedef itk::BinaryBallStructuringElement<OutputPixelType,ImageDimension> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::StructuringElementType

protected

template<class TInputImage , class TOutputImage >

typedef ImageToImageFilter<TInputImage,TOutputImage> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::Superclass

template<class TInputImage , class TOutputImage >

typedef itk::BinaryThresholdImageFilter<InputImageType, OutputImageType> itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::ThreshFilterType

protected

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::BrainMaskFromCTFilter ( )

protected

template<class TInputImage , class TOutputImage >

itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::~BrainMaskFromCTFilter ( )

inlineprotected

Member Function Documentation

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::CheckHounsFieldUnitsOff ( )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::CheckHounsFieldUnitsOn ( )

virtual

Type definitions

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::GenerateData ( )

protectedvirtual

Generate the output data.

template<class TInputImage , class TOutputImage >

virtual bool itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::GetCheckHounsFieldUnits ( ) const

virtual

template<class TInputImage , class TOutputImage >

virtual const char* itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class TInputImage , class TOutputImage >

virtual bool itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::GetIsHU ( ) const

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::IsHUOff ( )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::IsHUOn ( )

virtual

template<class TInputImage , class TOutputImage >

itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::itkStaticConstMacro	(	ImageDimension	,
		unsigned	int,
		TInputImage::ImageDimension
	)

template<class TInputImage , class TOutputImage >

static Pointer itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >

void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::SetCheckHounsFieldUnits ( bool  _arg )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::SetIsHU ( bool  _arg )

virtual

Member Data Documentation

template<class TInputImage , class TOutputImage >

bool itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::m_CheckHounsFieldUnits

protected

Flag to ask if the image should be scrolled for Hounsfield Units

template<class TInputImage , class TOutputImage >

bool itk::BrainMaskFromCTFilter< TInputImage, TOutputImage >::m_IsHU

protected

Flag that indicates that the CT image is in Hounsfield Units

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The documentation for this class was generated from the following file:

• itkBrainMaskFromCTFilter.h