itk::ImageMatrixFormReconstructionMethod< IntensityType > Class Template Reference

Base class for Image Reconstruction Methods. More...

Inheritance diagram for itk::ImageMatrixFormReconstructionMethod< IntensityType >:

Collaboration diagram for itk::ImageMatrixFormReconstructionMethod< IntensityType >:

Public Types
typedef ImageMatrixFormReconstructionMethod	Self
typedef ProcessObject	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef itk::ReconstructionUpdateCommand	ReconstructionUpdateCommandType
typedef ReconstructionUpdateCommand::Pointer	ReconstructionUpdateCommandPointer
typedef Image< IntensityType, 3 >	MatrixFormReconstructionType
typedef MatrixFormReconstructionType::Pointer	MatrixFormReconstructionPointer
typedef MatrixFormReconstructionType::RegionType	MatrixFormReconstructionRegionType
typedef MatrixFormReconstructionType::PixelType	MatrixFormReconstructionPixelType
typedef MatrixFormReconstructionType::SizeType	MatrixFormReconstructionSizeType
typedef MatrixFormReconstructionType::SpacingType	MatrixFormReconstructionSpacingType
typedef MatrixFormReconstructionType::PointType	MatrixFormReconstructionPointType
typedef MatrixFormReconstructionType::IndexType	MatrixFormReconstructionIndexType
typedef SingleValuedNonLinearOptimizer	OptimizerType
	Type of the optimizer. More...
typedef OptimizerType::Pointer	OptimizerPointer
typedef ImageMatrixFormReconstructionMetric < double >	MetricType
	The type of the metric. More...
typedef MetricType::Pointer	MetricPointer
typedef itk::ProjectionGeometry < double >	ProjectionGeometryType
	The projection geometry type. More...
typedef ProjectionGeometryType::Pointer	ProjectionGeometryPointer
typedef MetricType::ParametersType	ParametersType
typedef MatrixFormReconstructionType	MatrixFormReconstructionOutputType
typedef MatrixFormReconstructionOutputType::Pointer	MatrixFormReconstructionOutputPointer
typedef MatrixFormReconstructionOutputType::ConstPointer	MatrixFormReconstructionOutputConstPointer

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetOptimizer (OptimizerType *_arg)
virtual OptimizerType *	GetOptimizer ()
virtual void	SetMetric (MetricType *_arg)
virtual MetricType *	GetMetric ()
virtual void	SetProjectionGeometry (ProjectionGeometryType *_arg)
virtual ProjectionGeometryType *	GetProjectionGeometry ()
virtual void	SetReconstructionUpdateCommand (ReconstructionUpdateCommandType *_arg)
virtual ReconstructionUpdateCommandType *	GetReconstructionUpdateCommand ()
void	SetReconEstimate (MatrixFormReconstructionType *im3D)
	Set the 3D reconstruction estimate volume. More...
void	UpdateReconstructionEstimate (MatrixFormReconstructionType *im3D)
	Update the 3D reconstruction estimate volume. More...
void	UpdateInitialParameters (void)
	Update the initial optimisation parameters. More...
void	SetMatrixFormReconstructedVolumeSize (MatrixFormReconstructionSizeType &reconSize)
	Set the size, resolution and origin of the reconstructed image. More...
void	SetMatrixFormReconstructedVolumeSpacing (MatrixFormReconstructionSpacingType &reconSpacing)
void	SetMatrixFormReconstructedVolumeOrigin (MatrixFormReconstructionPointType &reconOrigin)
virtual void	Initialise () throw (ExceptionObject)
MatrixFormReconstructionOutputType *	GetOutput ()
MatrixFormReconstructionOutputType *	GetReconstructedVolume () const
virtual DataObjectPointer	MakeOutput (unsigned int idx)
unsigned long	GetMTime () const

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	ImageMatrixFormReconstructionMethod ()
virtual	~ImageMatrixFormReconstructionMethod ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	GenerateOutputInformation ()
void	StartMatrixFormReconstruction (void)
void	StartOptimization (void)
void	GenerateData ()

Detailed Description

template<class IntensityType = double>
class itk::ImageMatrixFormReconstructionMethod< IntensityType >

Base class for Image Reconstruction Methods.

This class defines the generic interface for a reconstruction method.

This class is templated over the type of the images to be reconstructed.

The method uses a generic optimizer that can be selected at run-time. The only restriction for the optimizer is that it should be able to operate in single-valued cost functions given that the metrics used to compare images provide a single value as output.

Member Typedef Documentation

template<class IntensityType = double>

typedef SmartPointer<const Self> itk::ImageMatrixFormReconstructionMethod< IntensityType >::ConstPointer

template<class IntensityType = double>

typedef MatrixFormReconstructionType::IndexType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionIndexType

template<class IntensityType = double>

typedef MatrixFormReconstructionOutputType::ConstPointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionOutputConstPointer

template<class IntensityType = double>

typedef MatrixFormReconstructionOutputType::Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionOutputPointer

template<class IntensityType = double>

typedef MatrixFormReconstructionType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionOutputType

Type for the output: Using Decorator pattern for enabling the reconstructed volume to be passed in the data pipeline

template<class IntensityType = double>

typedef MatrixFormReconstructionType::PixelType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionPixelType

template<class IntensityType = double>

typedef MatrixFormReconstructionType::Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionPointer

template<class IntensityType = double>

typedef MatrixFormReconstructionType::PointType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionPointType

template<class IntensityType = double>

typedef MatrixFormReconstructionType::RegionType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionRegionType

template<class IntensityType = double>

typedef MatrixFormReconstructionType::SizeType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionSizeType

template<class IntensityType = double>

typedef MatrixFormReconstructionType::SpacingType itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionSpacingType

template<class IntensityType = double>

typedef Image<IntensityType, 3> itk::ImageMatrixFormReconstructionMethod< IntensityType >::MatrixFormReconstructionType

Intensity type has to be double because the optimizer expects the parameters (intensities) to be double

template<class IntensityType = double>

typedef MetricType::Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::MetricPointer

template<class IntensityType = double>

typedef ImageMatrixFormReconstructionMetric<double> itk::ImageMatrixFormReconstructionMethod< IntensityType >::MetricType

The type of the metric.

template<class IntensityType = double>

typedef OptimizerType::Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::OptimizerPointer

template<class IntensityType = double>

typedef SingleValuedNonLinearOptimizer itk::ImageMatrixFormReconstructionMethod< IntensityType >::OptimizerType

Type of the optimizer.

template<class IntensityType = double>

typedef MetricType::ParametersType itk::ImageMatrixFormReconstructionMethod< IntensityType >::ParametersType

Type of the optimisation parameters (reconstructed intensities). This is the same type used to represent the search space of the optimization algorithm

template<class IntensityType = double>

typedef SmartPointer<Self> itk::ImageMatrixFormReconstructionMethod< IntensityType >::Pointer

template<class IntensityType = double>

typedef ProjectionGeometryType::Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::ProjectionGeometryPointer

template<class IntensityType = double>

typedef itk::ProjectionGeometry<double> itk::ImageMatrixFormReconstructionMethod< IntensityType >::ProjectionGeometryType

The projection geometry type.

template<class IntensityType = double>

typedef ReconstructionUpdateCommand::Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::ReconstructionUpdateCommandPointer

template<class IntensityType = double>

typedef itk::ReconstructionUpdateCommand itk::ImageMatrixFormReconstructionMethod< IntensityType >::ReconstructionUpdateCommandType

template<class IntensityType = double>

typedef ImageMatrixFormReconstructionMethod itk::ImageMatrixFormReconstructionMethod< IntensityType >::Self

Standard class typedefs.

template<class IntensityType = double>

typedef ProcessObject itk::ImageMatrixFormReconstructionMethod< IntensityType >::Superclass

Constructor & Destructor Documentation

template<class IntensityType = double>

itk::ImageMatrixFormReconstructionMethod< IntensityType >::ImageMatrixFormReconstructionMethod ( )

protected

template<class IntensityType = double>

virtual itk::ImageMatrixFormReconstructionMethod< IntensityType >::~ImageMatrixFormReconstructionMethod ( )

inlineprotectedvirtual

Member Function Documentation

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::GenerateData ( )

protected

Method invoked by the pipeline in order to trigger the computation of the reconstruction.

template<class IntensityType = double>

virtual void itk::ImageMatrixFormReconstructionMethod< IntensityType >::GenerateOutputInformation ( )

inlineprotectedvirtual

We avoid propagating the input region to the output by overloading this function

template<class IntensityType = double>

virtual const char* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class IntensityType = double>

virtual MetricType* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetMetric ( )

virtual

template<class IntensityType = double>

unsigned long itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetMTime

(

)

const

Method to return the latest modified time of this object or any of its cached ivars

template<class IntensityType = double>

virtual OptimizerType* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetOptimizer ( )

virtual

template<class IntensityType = double>

MatrixFormReconstructionOutputType* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetOutput

(

)

Returns the image resulting from the reconstruction process

template<class IntensityType = double>

virtual ProjectionGeometryType* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetProjectionGeometry ( )

virtual

template<class IntensityType = double>

MatrixFormReconstructionOutputType* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetReconstructedVolume

(

)

const

Returns the image resulting from the reconstruction process

template<class IntensityType = double>

virtual ReconstructionUpdateCommandType* itk::ImageMatrixFormReconstructionMethod< IntensityType >::GetReconstructionUpdateCommand ( )

virtual

template<class IntensityType = double>

virtual void itk::ImageMatrixFormReconstructionMethod< IntensityType >::Initialise ( ) throw ( ExceptionObject )

virtual

Initialise by setting the interconnects between the components.

template<class IntensityType = double>

virtual DataObjectPointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::MakeOutput ( unsigned int  idx )

virtual

Make a DataObject of the correct type to be used as the specified output.

template<class IntensityType = double>

static Pointer itk::ImageMatrixFormReconstructionMethod< IntensityType >::New ( )

static

Method for creation through the object factory.

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetMatrixFormReconstructedVolumeOrigin ( MatrixFormReconstructionPointType &  reconOrigin )

inline

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetMatrixFormReconstructedVolumeSize ( MatrixFormReconstructionSizeType &  reconSize )

inline

Set the size, resolution and origin of the reconstructed image.

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetMatrixFormReconstructedVolumeSpacing ( MatrixFormReconstructionSpacingType &  reconSpacing )

inline

template<class IntensityType = double>

virtual void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetMetric ( MetricType *  _arg )

virtual

Set/Get the Metric.

template<class IntensityType = double>

virtual void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetOptimizer ( OptimizerType *  _arg )

virtual

Set/Get the Optimizer.

template<class IntensityType = double>

virtual void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetProjectionGeometry ( ProjectionGeometryType *  _arg )

virtual

Set/Get the Projection Geometry.

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetReconEstimate

(

MatrixFormReconstructionType *

im3D

)

Set the 3D reconstruction estimate volume.

template<class IntensityType = double>

virtual void itk::ImageMatrixFormReconstructionMethod< IntensityType >::SetReconstructionUpdateCommand ( ReconstructionUpdateCommandType *  _arg )

virtual

Set/Get the ReconstructionUpdateCommand.

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::StartMatrixFormReconstruction ( void  )

protected

Method that initiates the reconstruction. This will Initialise and ensure that all inputs the registration needs are in place, via a call to Initialise() will then start the optimization process via a call to StartOptimization()

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::StartOptimization ( void  )

protected

Method that initiates the optimization process. This method should not be called directly by the users. Instead, this method is intended to be invoked internally by the StartReconstruction() which is in turn invoked by the Update() method.

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::UpdateInitialParameters

(

void

)

Update the initial optimisation parameters.

Update the 3D reconstruction estimate volume with the average of the existing estimate and the supplied volume.

template<class IntensityType = double>

void itk::ImageMatrixFormReconstructionMethod< IntensityType >::UpdateReconstructionEstimate

(

MatrixFormReconstructionType *

im3D

)

Update the 3D reconstruction estimate volume.

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The documentation for this class was generated from the following file:

• itkImageMatrixFormReconstructionMethod.h