itk::MammogramFatSubtractionImageFilter< TInputImage > Class Template Reference

2D image filter class to subtract the fat signal from a mammogram. More...

Inheritance diagram for itk::MammogramFatSubtractionImageFilter< TInputImage >:

Collaboration diagram for itk::MammogramFatSubtractionImageFilter< TInputImage >:

Public Types
typedef MammogramFatSubtractionImageFilter	Self
typedef ImageToImageFilter < TInputImage, TInputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage	InputImageType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::RegionType	InputImageRegionType
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::SpacingType	InputImageSpacingType
typedef InputImageType::PointType	InputImagePointType
typedef InputImageType::IndexType	InputImageIndexType
typedef InputImageType::SizeType	InputImageSizeType
typedef unsigned char	MaskPixelType
typedef itk::Image < MaskPixelType, ImageDimension >	MaskImageType
typedef MaskImageType::ConstPointer	MaskImageConstPointer
typedef MaskImageType::RegionType	MaskImageRegionType
typedef MaskImageType::Pointer	MaskImagePointer
typedef MaskImageType::SizeType	MaskImageSizeType
typedef MaskImageType::SpacingType	MaskImageSpacingType
typedef MaskImageType::PointType	MaskImagePointType
typedef MaskImageType::IndexType	MaskImageIndexType
typedef float	DistancePixelType
typedef itk::Image < DistancePixelType, ImageDimension >	DistanceImageType
typedef DistanceImageType::Pointer	DistanceImagePointer
typedef DistanceImageType::ConstPointer	DistanceImageConstPointer
typedef DistanceImageType::RegionType	DistanceImageRegionType
typedef DistanceImageType::SizeType	DistanceImageSizeType
typedef DistanceImageType::SpacingType	DistanceImageSpacingType
typedef DistanceImageType::PointType	DistanceImagePointType
typedef DistanceImageType::IndexType	DistanceImageIndexType
typedef itk::ImageRegionIterator < TInputImage >	IteratorType
typedef itk::ImageRegionIteratorWithIndex < TInputImage >	IteratorWithIndexType
typedef itk::ImageLinearIteratorWithIndex < MaskImageType >	MaskLineIteratorType
typedef itk::ImageRegionConstIterator < TInputImage >	IteratorConstType
typedef itk::ImageRegionConstIteratorWithIndex < TInputImage >	IteratorWithIndexConstType
typedef itk::MammogramFatEstimationFitMetricForArray < TInputImage >	FitArrayMetricType
typedef itk::MammogramFatEstimationFitMetricForImage < TInputImage >	FitImageMetricType

Public Member Functions
virtual const char *	GetClassName () const
	itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension)
void	SetMask (const MaskImageType *imMask)
	Set the mask image. More...
bool	GetVerbose (void)
void	SetVerbose (bool flag)
void	SetVerboseOn (void)
void	SetVerboseOff (void)
bool	GetComputeFatEstimationFit (void)
void	SetComputeFatEstimationFit (bool flag)
void	SetComputeFatEstimationFitOn (void)
void	SetComputeFatEstimationFitOff (void)
void	SetFileOutputIntensityVsEdgeDist (std::string fn)
void	SetFileOutputFit (std::string fn)
MaskImagePointer	GetMaskOfRegionInsideBreastEdge (void)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	MammogramFatSubtractionImageFilter ()
virtual	~MammogramFatSubtractionImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual DataObject::Pointer	MakeOutput (unsigned int idx)
template<typename ShrinkImageType >
void	ComputeShrinkFactors (typename ShrinkImageType::ConstPointer &image, unsigned int maxShrunkDimension, itk::Array< double > &sampling, typename ShrinkImageType::SpacingType &outSpacing, typename ShrinkImageType::SizeType &outSize)
template<typename ShrinkImageType >
ShrinkImageType::Pointer	ShrinkTheInputImage (typename ShrinkImageType::ConstPointer &image, unsigned int maxShrunkDimension, typename ShrinkImageType::SizeType &outSize)
template<typename ShrinkImageType >
ShrinkImageType::Pointer	ShrinkTheInputImageViaMinResample (typename ShrinkImageType::ConstPointer &image, unsigned int maxShrunkDimension, typename ShrinkImageType::SizeType &outSize)
void	GenerateData ()
	Single threaded execution. More...
void	ComputeFatEstimationFit ()
	Compute the fat subtraction via a fat estimation curve fit. More...
void	ComputeMinIntensityVersusDistanceFromEdge ()
	Compute the fat image via the minimum intensity at equal distances from the breast edge. More...
void	SubtractFatEstimation (InputImagePointer &imFatSubtraction, InputImagePointer &imFatEstimation)
	Subtract the fat estimation from the original image. More...
void	EnlargeOutputRequestedRegion (DataObject *output)
void	ComputeDistanceTransform (void)
	Compute a distance transform of the mask image. More...

Protected Attributes
bool	m_flgVerbose
bool	m_flgComputeFatEstimationFit
std::string	m_fileOutputIntensityVsEdgeDist
std::string	m_fileOutputFit
InputImagePointer	m_Image
MaskImagePointer	m_Mask
DistanceImagePointer	m_Distance
float	m_BreastEdgeWidthEstimate
float	m_FatThicknessEstimate

Detailed Description

template<class TInputImage>
class itk::MammogramFatSubtractionImageFilter< TInputImage >

2D image filter class to subtract the fat signal from a mammogram.

Member Typedef Documentation

template<class TInputImage >

typedef SmartPointer< const Self > itk::MammogramFatSubtractionImageFilter< TInputImage >::ConstPointer

template<class TInputImage >

typedef DistanceImageType::ConstPointer itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImageConstPointer

template<class TInputImage >

typedef DistanceImageType::IndexType itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImageIndexType

template<class TInputImage >

typedef DistanceImageType::Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImagePointer

template<class TInputImage >

typedef DistanceImageType::PointType itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImagePointType

template<class TInputImage >

typedef DistanceImageType::RegionType itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImageRegionType

template<class TInputImage >

typedef DistanceImageType::SizeType itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImageSizeType

template<class TInputImage >

typedef DistanceImageType::SpacingType itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImageSpacingType

template<class TInputImage >

typedef itk::Image<DistancePixelType, ImageDimension> itk::MammogramFatSubtractionImageFilter< TInputImage >::DistanceImageType

template<class TInputImage >

typedef float itk::MammogramFatSubtractionImageFilter< TInputImage >::DistancePixelType

Mask image

template<class TInputImage >

typedef itk::MammogramFatEstimationFitMetricForArray< TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::FitArrayMetricType

template<class TInputImage >

typedef itk::MammogramFatEstimationFitMetricForImage< TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::FitImageMetricType

template<class TInputImage >

typedef InputImageType::ConstPointer itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImageConstPointer

template<class TInputImage >

typedef InputImageType::IndexType itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImageIndexType

template<class TInputImage >

typedef InputImageType::PixelType itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImagePixelType

template<class TInputImage >

typedef InputImageType::Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImagePointer

template<class TInputImage >

typedef InputImageType::PointType itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImagePointType

template<class TInputImage >

typedef InputImageType::RegionType itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImageRegionType

template<class TInputImage >

typedef InputImageType::SizeType itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImageSizeType

template<class TInputImage >

typedef InputImageType::SpacingType itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImageSpacingType

template<class TInputImage >

typedef TInputImage itk::MammogramFatSubtractionImageFilter< TInputImage >::InputImageType

Type of the input image

template<class TInputImage >

typedef itk::ImageRegionConstIterator< TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::IteratorConstType

template<class TInputImage >

typedef itk::ImageRegionIterator< TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::IteratorType

template<class TInputImage >

typedef itk::ImageRegionConstIteratorWithIndex< TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::IteratorWithIndexConstType

template<class TInputImage >

typedef itk::ImageRegionIteratorWithIndex< TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::IteratorWithIndexType

template<class TInputImage >

typedef MaskImageType::ConstPointer itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImageConstPointer

template<class TInputImage >

typedef MaskImageType::IndexType itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImageIndexType

template<class TInputImage >

typedef MaskImageType::Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImagePointer

template<class TInputImage >

typedef MaskImageType::PointType itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImagePointType

template<class TInputImage >

typedef MaskImageType::RegionType itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImageRegionType

template<class TInputImage >

typedef MaskImageType::SizeType itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImageSizeType

template<class TInputImage >

typedef MaskImageType::SpacingType itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImageSpacingType

template<class TInputImage >

typedef itk::Image<MaskPixelType, ImageDimension> itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskImageType

template<class TInputImage >

typedef itk::ImageLinearIteratorWithIndex< MaskImageType > itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskLineIteratorType

template<class TInputImage >

typedef unsigned char itk::MammogramFatSubtractionImageFilter< TInputImage >::MaskPixelType

Mask image

template<class TInputImage >

typedef SmartPointer< Self > itk::MammogramFatSubtractionImageFilter< TInputImage >::Pointer

template<class TInputImage >

typedef MammogramFatSubtractionImageFilter itk::MammogramFatSubtractionImageFilter< TInputImage >::Self

Standard class typedefs.

template<class TInputImage >

typedef ImageToImageFilter< TInputImage,TInputImage > itk::MammogramFatSubtractionImageFilter< TInputImage >::Superclass

Constructor & Destructor Documentation

template<class TInputImage >

itk::MammogramFatSubtractionImageFilter< TInputImage >::MammogramFatSubtractionImageFilter ( )

protected

template<class TInputImage >

virtual itk::MammogramFatSubtractionImageFilter< TInputImage >::~MammogramFatSubtractionImageFilter ( )

protectedvirtual

Member Function Documentation

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::ComputeDistanceTransform ( void  )

protected

Compute a distance transform of the mask image.

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::ComputeFatEstimationFit ( )

protected

Compute the fat subtraction via a fat estimation curve fit.

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::ComputeMinIntensityVersusDistanceFromEdge ( )

protected

Compute the fat image via the minimum intensity at equal distances from the breast edge.

template<class TInputImage >

template<typename ShrinkImageType >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::ComputeShrinkFactors ( typename ShrinkImageType::ConstPointer &  image, unsigned int  maxShrunkDimension, itk::Array< double > &  sampling, typename ShrinkImageType::SpacingType &  outSpacing, typename ShrinkImageType::SizeType &  outSize  )

protected

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::EnlargeOutputRequestedRegion ( DataObject *  output )

protected

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::GenerateData ( )

protected

Single threaded execution.

template<class TInputImage >

virtual const char* itk::MammogramFatSubtractionImageFilter< TInputImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class TInputImage >

bool itk::MammogramFatSubtractionImageFilter< TInputImage >::GetComputeFatEstimationFit ( void  )

inline

template<class TInputImage >

MaskImagePointer itk::MammogramFatSubtractionImageFilter< TInputImage >::GetMaskOfRegionInsideBreastEdge

(

void

)

template<class TInputImage >

bool itk::MammogramFatSubtractionImageFilter< TInputImage >::GetVerbose ( void  )

inline

template<class TInputImage >

itk::MammogramFatSubtractionImageFilter< TInputImage >::itkStaticConstMacro	(	ImageDimension	,
		unsigned	int,
		TInputImage::ImageDimension
	)

Image dimension.

template<class TInputImage >

virtual DataObject::Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::MakeOutput ( unsigned int  idx )

protectedvirtual

Make a DataObject of the correct type to be used as the specified output.

template<class TInputImage >

static Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetComputeFatEstimationFit ( bool  flag )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetComputeFatEstimationFitOff ( void  )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetComputeFatEstimationFitOn ( void  )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetFileOutputFit ( std::string  fn )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetFileOutputIntensityVsEdgeDist ( std::string  fn )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetMask

(

const MaskImageType *

imMask

)

Set the mask image.

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetVerbose ( bool  flag )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetVerboseOff ( void  )

inline

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SetVerboseOn ( void  )

inline

template<class TInputImage >

template<typename ShrinkImageType >

ShrinkImageType::Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::ShrinkTheInputImage ( typename ShrinkImageType::ConstPointer &  image, unsigned int  maxShrunkDimension, typename ShrinkImageType::SizeType &  outSize  )

protected

template<class TInputImage >

template<typename ShrinkImageType >

ShrinkImageType::Pointer itk::MammogramFatSubtractionImageFilter< TInputImage >::ShrinkTheInputImageViaMinResample ( typename ShrinkImageType::ConstPointer &  image, unsigned int  maxShrunkDimension, typename ShrinkImageType::SizeType &  outSize  )

protected

template<class TInputImage >

void itk::MammogramFatSubtractionImageFilter< TInputImage >::SubtractFatEstimation ( InputImagePointer &  imFatSubtraction, InputImagePointer &  imFatEstimation  )

protected

Subtract the fat estimation from the original image.

Member Data Documentation

template<class TInputImage >

float itk::MammogramFatSubtractionImageFilter< TInputImage >::m_BreastEdgeWidthEstimate

protected

template<class TInputImage >

DistanceImagePointer itk::MammogramFatSubtractionImageFilter< TInputImage >::m_Distance

protected

template<class TInputImage >

float itk::MammogramFatSubtractionImageFilter< TInputImage >::m_FatThicknessEstimate

protected

template<class TInputImage >

std::string itk::MammogramFatSubtractionImageFilter< TInputImage >::m_fileOutputFit

protected

template<class TInputImage >

std::string itk::MammogramFatSubtractionImageFilter< TInputImage >::m_fileOutputIntensityVsEdgeDist

protected

template<class TInputImage >

bool itk::MammogramFatSubtractionImageFilter< TInputImage >::m_flgComputeFatEstimationFit

protected

template<class TInputImage >

bool itk::MammogramFatSubtractionImageFilter< TInputImage >::m_flgVerbose

protected

template<class TInputImage >

InputImagePointer itk::MammogramFatSubtractionImageFilter< TInputImage >::m_Image

protected

template<class TInputImage >

MaskImagePointer itk::MammogramFatSubtractionImageFilter< TInputImage >::m_Mask

protected

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The documentation for this class was generated from the following file:

• itkMammogramFatSubtractionImageFilter.h