itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage > Class Template Reference

2D image filter class to segment the pectoral muscle from a mammogram. More...

Inheritance diagram for itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >:

Public Types
typedef MammogramPectoralisSegmentationImageFilter	Self
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage	InputImageType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::RegionType	InputImageRegionType
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::SpacingType	InputImageSpacingType
typedef InputImageType::PointType	InputImagePointType
typedef InputImageType::IndexType	InputImageIndexType
typedef InputImageType::SizeType	InputImageSizeType
typedef TOutputImage	OutputImageType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::IndexType	OutputImageIndexType
typedef OutputImageType::PointType	OutputImagePointType
typedef itk::MammogramPectoralisFitMetric < InputImageType > ::TemplateImageType	TemplateImageType
typedef TemplateImageType::Pointer	TemplateImagePointer
typedef TemplateImageType::ConstPointer	TemplateImageConstPointer
typedef TemplateImageType::RegionType	TemplateImageRegionType
typedef TemplateImageType::PixelType	TemplateImagePixelType
typedef TemplateImageType::SpacingType	TemplateImageSpacingType
typedef TemplateImageType::PointType	TemplateImagePointType
typedef TemplateImageType::IndexType	TemplateImageIndexType
typedef TemplateImageType::SizeType	TemplateImageSizeType
typedef itk::ImageRegionIterator < TemplateImageType >	TemplateIteratorType
typedef itk::ImageRegionIteratorWithIndex < TemplateImageType >	TemplateIteratorWithIndexType
typedef unsigned char	MaskPixelType
typedef itk::Image < MaskPixelType, ImageDimension >	MaskImageType
typedef MaskImageType::ConstPointer	MaskImageConstPointer
typedef MaskImageType::RegionType	MaskImageRegionType
typedef MaskImageType::Pointer	MaskImagePointer
typedef MaskImageType::SizeType	MaskImageSizeType
typedef MaskImageType::SpacingType	MaskImageSpacingType
typedef MaskImageType::PointType	MaskImagePointType
typedef MaskImageType::IndexType	MaskImageIndexType
typedef itk::ImageRegionIterator < TInputImage >	IteratorType
typedef itk::ImageRegionIteratorWithIndex < TInputImage >	IteratorWithIndexType
typedef itk::ImageLinearIteratorWithIndex < MaskImageType >	MaskLineIteratorType
typedef itk::ImageRegionConstIterator < TInputImage >	IteratorConstType
typedef itk::ImageRegionConstIteratorWithIndex < TInputImage >	IteratorWithIndexConstType
typedef itk::MammogramLeftOrRightSideCalculator < InputImageType >	LeftOrRightSideCalculatorType
typedef LeftOrRightSideCalculatorType::BreastSideType	BreastSideType
typedef itk::MammogramPectoralisFitMetric < TInputImage >	FitMetricType

Public Member Functions
virtual const char *	GetClassName () const
	itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension)
void	SetMask (const MaskImageType *imMask)
	Set the optional mask image. More...
void	SetSSD (bool flag)
	Optimise SSD rather than normalised cross-correlation. More...
bool	GetVerbose (void)
void	SetVerbose (bool flag)
void	SetVerboseOn (void)
void	SetVerboseOff (void)
void	SetBreastSide (BreastSideType breastSide)
TemplateImagePointer	GetTemplateImage (void)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	MammogramPectoralisSegmentationImageFilter ()
virtual	~MammogramPectoralisSegmentationImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
template<typename ShrinkImageType >
ShrinkImageType::Pointer	ShrinkTheInputImage (typename ShrinkImageType::ConstPointer &image, unsigned int maxShrunkDimension, typename ShrinkImageType::SizeType &outSize)
void	GenerateData ()
void	GenerateTemplate (typename TInputImage::Pointer &imTemplate, typename TInputImage::RegionType region, double &tMean, double &tStdDev, double &nPixels)
void	EnlargeOutputRequestedRegion (DataObject *output)
void	ExhaustiveSearch (InputImageIndexType pecInterceptStart, InputImageIndexType pecInterceptEnd, typename FitMetricType::Pointer &metric, InputImagePointer &imPipelineConnector, InputImagePointType &bestPecInterceptInMM, typename FitMetricType::ParametersType &bestParameters)

Protected Attributes
bool	m_flgVerbose
bool	m_flgOptimiseSSD
BreastSideType	m_BreastSide
InputImagePointer	m_Image
MaskImagePointer	m_Mask
TemplateImagePointer	m_Template

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >

2D image filter class to segment the pectoral muscle from a mammogram.

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef LeftOrRightSideCalculatorType::BreastSideType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::BreastSideType

template<class TInputImage , class TOutputImage >

typedef SmartPointer< const Self > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::ConstPointer

template<class TInputImage , class TOutputImage >

typedef itk::MammogramPectoralisFitMetric< TInputImage > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::FitMetricType

template<class TInputImage , class TOutputImage >

typedef InputImageType::ConstPointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImageConstPointer

template<class TInputImage , class TOutputImage >

typedef InputImageType::IndexType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImageIndexType

template<class TInputImage , class TOutputImage >

typedef InputImageType::PixelType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImagePixelType

template<class TInputImage , class TOutputImage >

typedef InputImageType::Pointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImagePointer

template<class TInputImage , class TOutputImage >

typedef InputImageType::PointType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImagePointType

template<class TInputImage , class TOutputImage >

typedef InputImageType::RegionType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImageRegionType

template<class TInputImage , class TOutputImage >

typedef InputImageType::SizeType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImageSizeType

template<class TInputImage , class TOutputImage >

typedef InputImageType::SpacingType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImageSpacingType

template<class TInputImage , class TOutputImage >

typedef TInputImage itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::InputImageType

Type of the input image

template<class TInputImage , class TOutputImage >

typedef itk::ImageRegionConstIterator< TInputImage > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::IteratorConstType

template<class TInputImage , class TOutputImage >

typedef itk::ImageRegionIterator< TInputImage > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::IteratorType

template<class TInputImage , class TOutputImage >

typedef itk::ImageRegionConstIteratorWithIndex< TInputImage > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::IteratorWithIndexConstType

template<class TInputImage , class TOutputImage >

typedef itk::ImageRegionIteratorWithIndex< TInputImage > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::IteratorWithIndexType

template<class TInputImage , class TOutputImage >

typedef itk::MammogramLeftOrRightSideCalculator< InputImageType > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::LeftOrRightSideCalculatorType

template<class TInputImage , class TOutputImage >

typedef MaskImageType::ConstPointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImageConstPointer

template<class TInputImage , class TOutputImage >

typedef MaskImageType::IndexType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImageIndexType

template<class TInputImage , class TOutputImage >

typedef MaskImageType::Pointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImagePointer

template<class TInputImage , class TOutputImage >

typedef MaskImageType::PointType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImagePointType

template<class TInputImage , class TOutputImage >

typedef MaskImageType::RegionType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImageRegionType

template<class TInputImage , class TOutputImage >

typedef MaskImageType::SizeType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImageSizeType

template<class TInputImage , class TOutputImage >

typedef MaskImageType::SpacingType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImageSpacingType

template<class TInputImage , class TOutputImage >

typedef itk::Image<MaskPixelType, ImageDimension> itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskImageType

template<class TInputImage , class TOutputImage >

typedef itk::ImageLinearIteratorWithIndex< MaskImageType > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskLineIteratorType

template<class TInputImage , class TOutputImage >

typedef unsigned char itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MaskPixelType

Optional mask image

template<class TInputImage , class TOutputImage >

typedef OutputImageType::IndexType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::OutputImageIndexType

template<class TInputImage , class TOutputImage >

typedef OutputImageType::PixelType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::OutputImagePixelType

template<class TInputImage , class TOutputImage >

typedef OutputImageType::Pointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::OutputImagePointer

template<class TInputImage , class TOutputImage >

typedef OutputImageType::PointType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::OutputImagePointType

template<class TInputImage , class TOutputImage >

typedef OutputImageType::RegionType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::OutputImageRegionType

template<class TInputImage , class TOutputImage >

typedef TOutputImage itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::OutputImageType

Type of the output image

template<class TInputImage , class TOutputImage >

typedef SmartPointer< Self > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::Pointer

template<class TInputImage , class TOutputImage >

typedef MammogramPectoralisSegmentationImageFilter itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

template<class TInputImage , class TOutputImage >

typedef ImageToImageFilter< TInputImage,TOutputImage > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::Superclass

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::ConstPointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImageConstPointer

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::IndexType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImageIndexType

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::PixelType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImagePixelType

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::Pointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImagePointer

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::PointType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImagePointType

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::RegionType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImageRegionType

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::SizeType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImageSizeType

template<class TInputImage , class TOutputImage >

typedef TemplateImageType::SpacingType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImageSpacingType

template<class TInputImage , class TOutputImage >

typedef itk::MammogramPectoralisFitMetric<InputImageType>::TemplateImageType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateImageType

Type of the template image

template<class TInputImage , class TOutputImage >

typedef itk::ImageRegionIterator< TemplateImageType > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateIteratorType

template<class TInputImage , class TOutputImage >

typedef itk::ImageRegionIteratorWithIndex< TemplateImageType > itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::TemplateIteratorWithIndexType

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::MammogramPectoralisSegmentationImageFilter ( )

protected

template<class TInputImage , class TOutputImage >

virtual itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::~MammogramPectoralisSegmentationImageFilter ( )

protectedvirtual

Member Function Documentation

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::EnlargeOutputRequestedRegion ( DataObject *  output )

protected

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::ExhaustiveSearch ( InputImageIndexType  pecInterceptStart, InputImageIndexType  pecInterceptEnd, typename FitMetricType::Pointer &  metric, InputImagePointer &  imPipelineConnector, InputImagePointType &  bestPecInterceptInMM, typename FitMetricType::ParametersType &  bestParameters  )

protected

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::GenerateData ( )

protected

Single threaded execution

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::GenerateTemplate ( typename TInputImage::Pointer &  imTemplate, typename TInputImage::RegionType  region, double &  tMean, double &  tStdDev, double &  nPixels  )

protected

template<class TInputImage , class TOutputImage >

virtual const char* itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class TInputImage , class TOutputImage >

TemplateImagePointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::GetTemplateImage ( void  )

inline

template<class TInputImage , class TOutputImage >

bool itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::GetVerbose ( void  )

inline

template<class TInputImage , class TOutputImage >

itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::itkStaticConstMacro	(	ImageDimension	,
		unsigned	int,
		TInputImage::ImageDimension
	)

Image dimension.

template<class TInputImage , class TOutputImage >

static Pointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::SetBreastSide ( BreastSideType  breastSide )

inline

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::SetMask

(

const MaskImageType *

imMask

)

Set the optional mask image.

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::SetSSD ( bool  flag )

inline

Optimise SSD rather than normalised cross-correlation.

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::SetVerbose ( bool  flag )

inline

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::SetVerboseOff ( void  )

inline

template<class TInputImage , class TOutputImage >

void itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::SetVerboseOn ( void  )

inline

template<class TInputImage , class TOutputImage >

template<typename ShrinkImageType >

ShrinkImageType::Pointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::ShrinkTheInputImage ( typename ShrinkImageType::ConstPointer &  image, unsigned int  maxShrunkDimension, typename ShrinkImageType::SizeType &  outSize  )

protected

Member Data Documentation

template<class TInputImage , class TOutputImage >

BreastSideType itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::m_BreastSide

protected

template<class TInputImage , class TOutputImage >

bool itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::m_flgOptimiseSSD

protected

template<class TInputImage , class TOutputImage >

bool itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::m_flgVerbose

protected

template<class TInputImage , class TOutputImage >

InputImagePointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::m_Image

protected

template<class TInputImage , class TOutputImage >

MaskImagePointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::m_Mask

protected

template<class TInputImage , class TOutputImage >

TemplateImagePointer itk::MammogramPectoralisSegmentationImageFilter< TInputImage, TOutputImage >::m_Template

protected

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The documentation for this class was generated from the following file:

• itkMammogramPectoralisSegmentationImageFilter.h