Inheritance diagram for itk::MammogramRegistrationFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::MammogramRegistrationFilter< TInputImage, TOutputImage >:

Public Types
enum	enumRegistrationImagesType { REGISTER_ORIGINAL_IMAGES, REGISTER_MASKS, REGISTER_DISTANCE_TRANSFORMS }
	The input images to register. More...

typedef MammogramRegistrationFilter	Self
	Standard class typedefs. More...

typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass

typedef SmartPointer< Self >	Pointer

typedef TInputImage	InputImageType
	Type of the input image. More...

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::RegionType	InputImageRegionType

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::SpacingType	InputImageSpacingType

typedef InputImageType::PointType	InputImagePointType

typedef NumericTraits < InputImagePixelType > ::RealType	RealType

typedef TOutputImage	OutputImageType
	Type of the output image. More...

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::IndexType	OutputImageIndexType

typedef OutputImageType::PointType	OutputImagePointType

typedef itk::Vector< float, ImageDimension >	VectorPixelType

typedef itk::Image < VectorPixelType, ImageDimension >	DeformationFieldType

typedef itk::ImageFileReader < InputImageType >	FileReaderType

typedef itk::ImageFileWriter < InputImageType >	FileWriterType

typedef double	ScalarType

typedef itk::ImageRegistrationFactory < InputImageType, ImageDimension, ScalarType >	FactoryType

typedef FactoryType::EulerAffineTransformType	EulerAffineTransformType

typedef EulerAffineTransformType::Pointer	EulerAffinePointerType

typedef itk::ImageMomentsCalculator < InputImageType >	ImageMomentCalculatorType

typedef itk::MammogramMaskSegmentationImageFilter < InputImageType, InputImageType >	MammogramMaskFilterType

Public Member Functions
virtual const char *	GetClassName () const
	Run-time type information (and related methods). More...

	itkStaticConstMacro (ImageDimension, unsigned int, TInputImage::ImageDimension)
	Image dimension. More...

void	SetVerboseOn (void)

void	SetVerboseOff (void)

void	SetDebugOn (void)

void	SetDebugOff (void)

void	SetOverwriteRegistration (void)

void	SetExecutablesDirectoryToTry (std::string dir)
	Set the directory to look for executables in. More...

void	SetTypeOfInputImagesToRegister (enumRegistrationImagesType regImagesType)
	Set the registration image type. More...

virtual void	SetControlPointSpacing (float _arg)
	Set the final control point spacing for non-rigid registrations. More...

virtual float	GetControlPointSpacing ()
	Get the final control point spacing for non-rigid registrations. More...

virtual void	SetNumberOfLevels (unsigned int _arg)
	Set the number of multi-scale registration levels. More...

virtual unsigned int	GetNumberOfLevels ()
	Get the number of multi-scale registration levels. More...

virtual void	SetNumberOfLevelsToUse (unsigned int _arg)
	Set the number of multi-scale registration levels to use. More...

virtual unsigned int	GetNumberOfLevelsToUse ()
	Get the number of multi-scale registration levels to use. More...

void	SetTargetImage (InputImagePointer imTarget)
	Set the target image. More...

void	SetSourceImage (InputImagePointer imSource)
	Set the source image. More...

void	SetTargetMask (InputImagePointer maskTarget)
	Set the target mask. More...

void	SetSourceMask (InputImagePointer maskSource)
	Set the source mask. More...

void	SetTargetRegnMask (InputImagePointer maskTargetRegn)
	Set the target registration mask. More...

void	SetWorkingDirectory (std::string directory)
	Set the working directory for storing any intermediate files. More...

void	SetFileTarget (std::string filename)
	Set the target image filename. More...

void	SetFileSource (std::string filename)
	Set the source image filename. More...

void	SetFileTargetMask (std::string filename)
	Set the target mask image filename. More...

void	SetFileSourceMask (std::string filename)
	Set the source mask image filename. More...

void	SetFileInputTargetRegistrationMask (std::string filename)
	Set the input target registration mask filename. More...

void	SetFileOutputTargetRegistrationMask (std::string fileOut)
	Set the output target registration mask filename. More...

void	SetFileTargetDistanceTransform (std::string fileOut)
	Set the output target mask distance transform image. More...

void	SetFileSourceDistanceTransform (std::string fileOut)
	Set the output source mask distance transform image. More...

void	SetFileOutputAffineTransformation (std::string fileOut)
	Set the output affine transformation matrix file. More...

void	SetFileOutputNonRigidTransformation (std::string fileOut)
	Set the output non-rigid transformation (control-point) file. More...

void	SetFileOutputDeformation (std::string fileOut)
	Set the output deformation field file. More...

void	SetFileOutputAffineRegistered (std::string fileOut)
	Set the output affine registered file. More...

void	SetFileOutputNonRigidRegistered (std::string fileOut)
	Set the output non-rigid registered file. More...

void	SetRegisterNonRigid (void)
	Specify whether to perform a non-rigid registration. More...

InputImagePointType	TransformPoint (InputImagePointType point)
	Transform a point from the target image to the source. More...

void	NonRigidlyTransformImageFile (std::string fileImage, std::string fileResult)
	Non-rigidly trasnform an image file using the registration. More...

Static Public Member Functions
static Pointer	New ()
	Method for creation through the object factory. More...

Protected Member Functions
	MammogramRegistrationFilter ()

	~MammogramRegistrationFilter ()

std::string	ImageFileIsNiftiOrConvert (std::string fileInput)
	Check if an image is nifti and create a nifti version if not. More...

InputImagePointer	GetDistanceTransform (InputImagePointer imMask)
	Compute the distance transform of a mask. More...

InputImagePointer	GetTargetRegistrationMask (InputImagePointer imMask)
	Expand the target mask to include the breast edge. More...

void	InitialiseTransformationFromImageMoments (InputImagePointer imTarget, InputImagePointer imSource)
	Initialise the affine transform using the image moments. More...

std::string	AddSamplingFactorSuffix (std::string fileInput, float ampling)
	Create a new filename for a subsampled image. More...

std::string	FileOfImageWithDimensionsLessThan2048 (std::string fileInput)
	Create a subsampled image if any of the image dimensions exceed 2048. More...

void	Print (void)
	Print the object. More...

InputImagePointer	RunAffineRegistration (InputImagePointer imTarget, InputImagePointer imSource, int finalInterpolator=4, int registrationInterpolator=2)
	The affine registration. More...

InputImagePointer	RunNonRigidRegistration (void)
	The a non-rigid registration. More...

bool	ReadAffineTransformation (std::string fileAffineTransformation)
	Read the affine transformation. More...

bool	ReadNonRigidDeformationField (std::string fileInputDeformation)
	Read the affine transformation. More...

bool	ReadRegistrationData ()
	Read the transformations instead of re-running them? More...

virtual void	GenerateData ()
	Does the real work. More...

DataObject::Pointer	MakeOutput (unsigned int idx)
	Create the Output. More...

Protected Attributes
bool	m_FlgVerbose

bool	m_FlgDebug

bool	m_FlgOverwrite
	Overwrite existing registration even if it already exists. More...

bool	m_FlgRegisterNonRigid
	Specify whether to perform a non-rigid registration. More...

enumRegistrationImagesType	m_TypeOfInputImagesToRegister
	Specify the input images to register. More...

float	m_ControlPointSpacing
	The final control point spacing in mm. More...

unsigned int	m_NumberOfLevels
	The number of multi-scale registration levels. More...

unsigned int	m_NumberOfLevelsToUse
	The number of multi-scale registration levels to use. More...

std::string	m_DirWorking
	A working directory for storing any intermediate files. More...

std::string	m_DirExecutable
	A directory to look for executables in. More...

std::string	m_FileTarget
	The input target image filename. More...

std::string	m_FileSource
	The input source image filename. More...

std::string	m_FileTargetMask
	The input target mask image filename. More...

std::string	m_FileSourceMask
	The input source mask image filename. More...

std::string	m_FileInputTargetRegistrationMask
	The input target registration mask filename. More...

std::string	m_FileOutputTargetRegistrationMask
	The output target registration mask filename. More...

std::string	m_FileTargetDistanceTransform
	The output target mask distance transform image. More...

std::string	m_FileSourceDistanceTransform
	The output source mask distance transform image. More...

std::string	m_FileOutputAffineTransformation
	The output affine transformation matrix. More...

std::string	m_FileOutputNonRigidTransformation
	The output non-rigid transformation. More...

std::string	m_FileOutputDeformation
	The output deformation field. More...

std::string	m_FileOutputAffineRegistered
	The output affine registered image. More...

std::string	m_FileOutputNonRigidRegistered
	The output non-rigidly registered image. More...

InputImagePointer	m_Target
	The target image. More...

InputImagePointer	m_Source
	The source image. More...

InputImagePointer	m_TargetMask
	The target mask image. More...

InputImagePointer	m_SourceMask
	The source mask image. More...

InputImagePointer	m_TargetRegnMask
	The target registration mask image. More...

EulerAffinePointerType	m_AffineTransform
	The affine transformation. More...

DeformationFieldType::Pointer	m_DeformationField
	The registration deformation field. More...