itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar > Class Template Reference

This class takes as input 2 input images, and outputs the registration force using Marc's Parzen window approach. (reference to follow). More...

Inheritance diagram for itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >:

Collaboration diagram for itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >:

Public Types
typedef ParzenWindowNMIDerivativeForceGenerator	Self
typedef RegistrationForceFilter < TFixedImage, TMovingImage, TDeformationScalar >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::OutputDataType	OutputDataType
typedef Superclass::OutputPixelType	OutputPixelType
typedef Superclass::OutputImageType	OutputImageType
typedef OutputImageType::SpacingType	OutputImageSpacingType
typedef Superclass::InputImageType	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef Superclass::InputImageRegionType	RegionType
typedef Superclass::MetricType	MetricType
typedef Superclass::MetricPointer	MetricPointer
typedef Superclass::HistogramType	HistogramType
typedef Superclass::HistogramPointer	HistogramPointer
typedef Superclass::HistogramSizeType	HistogramSizeType
typedef Superclass::HistogramMeasurementVectorType	HistogramMeasurementVectorType
typedef Superclass::HistogramFrequencyType	HistogramFrequencyType
typedef Superclass::HistogramIteratorType	HistogramIteratorType
typedef HistogramType::ConstPointer	HistogramConstPointer
typedef Superclass::MeasureType	MeasureType
typedef LinearlyInterpolatedDerivativeFilter < TFixedImage, TMovingImage, TScalarType, TDeformationScalar >	ScalarImageGradientFilterType
typedef ScalarImageGradientFilterType::Pointer	ScalarImageGradientFilterPointer
Public Types inherited from itk::RegistrationForceFilter< TFixedImage, TMovingImage, TDeformationScalar >
typedef RegistrationForceFilter	Self
typedef ImageToImageFilter < TFixedImage, Image< Vector < TDeformationScalar, TFixedImage::ImageDimension > , TFixedImage::ImageDimension > >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TDeformationScalar	OutputDataType
typedef Vector< OutputDataType, itkGetStaticConstMacro(Dimension) >	OutputPixelType
typedef Image< OutputPixelType, itkGetStaticConstMacro(Dimension) >	OutputImageType
typedef Superclass::InputImageType	InputImageType
typedef InputImageType::PixelType	InputImagePixelType
typedef Superclass::InputImageRegionType	RegionType
typedef TDeformationScalar	MeasureType
typedef HistogramSimilarityMeasure < TFixedImage, TMovingImage >	MetricType
typedef MetricType::Pointer	MetricPointer
typedef MetricType::HistogramType	HistogramType
typedef MetricType::HistogramPointer	HistogramPointer
typedef MetricType::HistogramSizeType	HistogramSizeType
typedef MetricType::HistogramMeasurementVectorType	HistogramMeasurementVectorType
typedef MetricType::HistogramFrequencyType	HistogramFrequencyType
typedef MetricType::HistogramIteratorType	HistogramIteratorType
typedef SpatialObject< Dimension >	FixedImageMaskType
typedef Image< double, TFixedImage::ImageDimension >	JacobianImageType

Public Member Functions
virtual const char *	GetClassName () const
	itkStaticConstMacro (Dimension, unsigned int, TFixedImage::ImageDimension)
virtual void	SetScalarImageGradientFilter (ScalarImageGradientFilterType *_arg)
virtual const ScalarImageGradientFilterType *	GetScalarImageGradientFilter ()
Public Member Functions inherited from itk::RegistrationForceFilter< TFixedImage, TMovingImage, TDeformationScalar >
	itkStaticConstMacro (Dimension, unsigned int, TFixedImage::ImageDimension)
virtual void	SetFixedImage (const InputImageType *image)
virtual void	SetTransformedMovingImage (const InputImageType *image)
virtual void	SetUnTransformedMovingImage (const InputImageType *image)
virtual void	SetNthInput (unsigned int idx, const InputImageType *)
virtual void	SetMetric (MetricType *_arg)
virtual MetricType *	GetMetric ()
virtual void	SetScaleToSizeOfVoxelAxis (bool _arg)
virtual bool	GetScaleToSizeOfVoxelAxis ()
virtual void	SetFixedUpperPixelValue (InputImagePixelType _arg)
virtual InputImagePixelType	GetFixedUpperPixelValue ()
virtual void	SetFixedLowerPixelValue (InputImagePixelType _arg)
virtual InputImagePixelType	GetFixedLowerPixelValue ()
virtual void	SetMovingUpperPixelValue (InputImagePixelType _arg)
virtual InputImagePixelType	GetMovingUpperPixelValue ()
virtual void	SetMovingLowerPixelValue (InputImagePixelType _arg)
virtual InputImagePixelType	GetMovingLowerPixelValue ()
virtual void	SetIsSymmetric (bool _arg)
virtual bool	GetIsSymmetric ()
virtual void	SetFixedImageMask (const FixedImageMaskType *fixedImageMask)
void	WriteForceImage (std::string filename)
virtual void	SetFixedImageTransformJacobian (typename JacobianImageType::Pointer jacobian)
virtual void	SetMovingImageTransformJacobian (typename JacobianImageType::Pointer jacobian)

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	ParzenWindowNMIDerivativeForceGenerator ()
	~ParzenWindowNMIDerivativeForceGenerator ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	BeforeThreadedGenerateData ()
virtual void	ThreadedGenerateData (const RegionType &outputRegionForThread, ThreadIdType threadId)
Protected Member Functions inherited from itk::RegistrationForceFilter< TFixedImage, TMovingImage, TDeformationScalar >
	RegistrationForceFilter ()
	~RegistrationForceFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	AfterThreadedGenerateData ()

Protected Attributes
ScalarImageGradientFilterPointer	m_ScalarImageGradientFilter
Protected Attributes inherited from itk::RegistrationForceFilter< TFixedImage, TMovingImage, TDeformationScalar >
MetricPointer	m_Metric
bool	m_ScaleToSizeOfVoxelAxis
InputImagePixelType	m_FixedUpperPixelValue
InputImagePixelType	m_FixedLowerPixelValue
InputImagePixelType	m_MovingUpperPixelValue
InputImagePixelType	m_MovingLowerPixelValue
const FixedImageMaskType *	m_FixedImageMask
bool	m_IsSymmetric
JacobianImageType::Pointer	m_FixedImageTransformJacobian
JacobianImageType::Pointer	m_MovingImageTransformJacobian

Detailed Description

template<class TFixedImage, class TMovingImage, class TScalarType, class TDeformationScalar>
class itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >

This class takes as input 2 input images, and outputs the registration force using Marc's Parzen window approach. (reference to follow).

As of 20090126, this is a bit of a simple implementation, as we assume that the image has the same number of intensity values as the histogram has bins. So you MUST rescale your image image to fit the histogram first.

See also

RegistrationForceFilter NMILocalHistogramDerivativeForceFilter.

Member Typedef Documentation

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef SmartPointer<const Self> itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::ConstPointer

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef HistogramType::ConstPointer itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramConstPointer

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::HistogramFrequencyType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramFrequencyType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::HistogramIteratorType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramIteratorType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::HistogramMeasurementVectorType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramMeasurementVectorType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::HistogramPointer itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramPointer

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::HistogramSizeType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramSizeType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::HistogramType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::HistogramType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::InputImageType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::InputImageType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef InputImageType::PixelType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::InputPixelType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::MeasureType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::MeasureType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::MetricPointer itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::MetricPointer

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::MetricType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::MetricType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::OutputDataType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::OutputDataType

Standard typedefs.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef OutputImageType::SpacingType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::OutputImageSpacingType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::OutputImageType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::OutputImageType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::OutputPixelType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::OutputPixelType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef SmartPointer<Self> itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::Pointer

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef Superclass::InputImageRegionType itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::RegionType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef ScalarImageGradientFilterType::Pointer itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::ScalarImageGradientFilterPointer

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef LinearlyInterpolatedDerivativeFilter<TFixedImage, TMovingImage, TScalarType, TDeformationScalar> itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::ScalarImageGradientFilterType

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef ParzenWindowNMIDerivativeForceGenerator itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::Self

Standard "Self" typedef.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

typedef RegistrationForceFilter<TFixedImage, TMovingImage, TDeformationScalar> itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::Superclass

Constructor & Destructor Documentation

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::ParzenWindowNMIDerivativeForceGenerator ( )

protected

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::~ParzenWindowNMIDerivativeForceGenerator ( )

inlineprotected

Member Function Documentation

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

virtual void itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::BeforeThreadedGenerateData ( )

protectedvirtual

This gets called before ThreadedGenerateData.

Reimplemented from itk::RegistrationForceFilter< TFixedImage, TMovingImage, TDeformationScalar >.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

virtual const char* itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::RegistrationForceFilter< TFixedImage, TMovingImage, TDeformationScalar >.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

virtual const ScalarImageGradientFilterType* itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::GetScalarImageGradientFilter ( )

virtual

Get a pointer to the ScalarImageGradientFilter.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::itkStaticConstMacro	(	Dimension	,
		unsigned	int,
		TFixedImage::ImageDimension
	)

Get the number of dimensions we are working in.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

static Pointer itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::New ( )

static

Method for creation through the object factory.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

void itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

virtual void itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::SetScalarImageGradientFilter ( ScalarImageGradientFilterType *  _arg )

virtual

Connect the ScalarImageGradientFilter.

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

virtual void itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::ThreadedGenerateData ( const RegionType &  outputRegionForThread, ThreadIdType  threadId  )

protectedvirtual

The "In The Money" method.

Member Data Documentation

template<class TFixedImage , class TMovingImage , class TScalarType , class TDeformationScalar >

ScalarImageGradientFilterPointer itk::ParzenWindowNMIDerivativeForceGenerator< TFixedImage, TMovingImage, TScalarType, TDeformationScalar >::m_ScalarImageGradientFilter

protected

Calculate gradient of input image (transformed moving image).

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The documentation for this class was generated from the following file:

• itkParzenWindowNMIDerivativeForceGenerator.h