itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType > Class Template Reference

Base class for Image Reconstruction Methods. More...

Inheritance diagram for itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >:

Collaboration diagram for itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >:

Public Types
typedef SimultaneousReconstructionAndRegistrationMethod	Self
typedef ProcessObject	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef itk::SimultaneousReconAndRegnUpdateCommand	SimultaneousReconAndRegnUpdateCommandType
typedef SimultaneousReconAndRegnUpdateCommand::Pointer	SimultaneousReconAndRegnUpdateCommandPointer
typedef Image< IntensityType, 3 >	InputProjectionVolumeType
typedef InputProjectionVolumeType::Pointer	InputProjectionVolumePointer
typedef InputProjectionVolumeType::RegionType	InputProjectionVolumeRegionType
typedef InputProjectionVolumeType::PixelType	InputProjectionVolumePixelType
typedef InputProjectionVolumeType::SizeType	InputProjectionVolumeSizeType
typedef InputProjectionVolumeType::SpacingType	InputProjectionVolumeSpacingType
typedef InputProjectionVolumeType::PointType	InputProjectionVolumePointType
typedef Image< IntensityType, 3 >	ReconstructionType
typedef ReconstructionType::Pointer	ReconstructionPointer
typedef ReconstructionType::RegionType	ReconstructionRegionType
typedef ReconstructionType::PixelType	ReconstructionPixelType
typedef ReconstructionType::SizeType	ReconstructionSizeType
typedef ReconstructionType::SpacingType	ReconstructionSpacingType
typedef ReconstructionType::PointType	ReconstructionPointType
typedef ReconstructionType::IndexType	ReconstructionIndexType
typedef SingleValuedNonLinearOptimizer	OptimizerType
	Type of the optimizer. More...
typedef OptimizerType::Pointer	OptimizerPointer
typedef SimultaneousReconstructionRegistrationMetric < IntensityType >	MetricType
	The type of the metric. More...
typedef MetricType::Pointer	MetricPointer
typedef itk::ProjectionGeometry < IntensityType >	ProjectionGeometryType
	The projection geometry type. More...
typedef ProjectionGeometryType::Pointer	ProjectionGeometryPointer
typedef MetricType::ParametersType	ParametersType
typedef ReconstructionType	ReconstructionOutputType
typedef ReconstructionOutputType::Pointer	ReconstructionOutputPointer
typedef ReconstructionOutputType::ConstPointer	ReconstructionOutputConstPointer

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetOptimizer (OptimizerType *_arg)
virtual OptimizerType *	GetOptimizer ()
virtual void	SetMetric (MetricType *_arg)
virtual MetricType *	GetMetric ()
virtual void	SetProjectionGeometry (ProjectionGeometryType *_arg)
virtual ProjectionGeometryType *	GetProjectionGeometry ()
virtual void	SetSimultaneousReconAndRegnUpdateCommand (SimultaneousReconAndRegnUpdateCommandType *_arg)
virtual SimultaneousReconAndRegnUpdateCommandType *	GetSimultaneousReconAndRegnUpdateCommand ()
void	SetReconEstimate (ReconstructionType *im3D)
	Set the 3D reconstruction estimate volume. More...
void	UpdateReconstructionEstimate (ReconstructionType *im3D)
	Update the 3D reconstruction estimate volume. More...
void	UpdateReconstructionEstimateWithAverage (ReconstructionType *im3D)
void	UpdateInitialParameters (void)
	Update the initial optimisation parameters. More...
bool	SetInputFixedImageProjections (InputProjectionVolumeType *imFixedProjections)
	Set the fixed image volume of projection images. More...
bool	SetInputMovingImageProjections (InputProjectionVolumeType *imMovingProjections)
	Set the moving image volume of projection images. More...
void	SetReconstructedVolumeSize (ReconstructionSizeType &reconSize)
	Set the size, resolution and origin of the reconstructed image. More...
void	SetReconstructedVolumeSpacing (ReconstructionSpacingType &reconSpacing)
void	SetReconstructedVolumeOrigin (ReconstructionPointType &reconOrigin)
virtual void	Initialise () throw (ExceptionObject)
InputProjectionVolumeType *	GetInput ()
ReconstructionOutputType *	GetOutput ()
ReconstructionOutputType *	GetReconstructedVolume () const
virtual DataObjectPointer	MakeOutput (unsigned int idx)
unsigned long	GetMTime () const
void	SetFlagUpdateReconEstimateWithAverage (bool flag)
bool	GetFlagUpdateReconEstimateWithAverage (void)
void	SetNumberOfReconRegnIterations (unsigned int n)
	Set the number of combined registration-reconstruction iterations to perform. More...
void	GetNumberOfReconRegnIterations (void)
	Get the number of combined registration-reconstruction iterations to perform. More...

Static Public Member Functions
static Pointer	New ()

Protected Member Functions
	SimultaneousReconstructionAndRegistrationMethod ()
virtual	~SimultaneousReconstructionAndRegistrationMethod ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	GenerateOutputInformation ()
void	StartReconstruction (void)
void	StartOptimization (void)
void	GenerateData ()

Detailed Description

template<class IntensityType = double>
class itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >

Base class for Image Reconstruction Methods.

This class defines the generic interface for a reconstruction method.

This class is templated over the type of the images to be reconstructed.

The method uses a generic optimizer that can be selected at run-time. The only restriction for the optimizer is that it should be able to operate in single-valued cost functions given that the metrics used to compare images provide a single value as output.

Member Typedef Documentation

template<class IntensityType = double>

typedef SmartPointer<const Self> itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ConstPointer

template<class IntensityType = double>

typedef InputProjectionVolumeType::PixelType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumePixelType

template<class IntensityType = double>

typedef InputProjectionVolumeType::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumePointer

template<class IntensityType = double>

typedef InputProjectionVolumeType::PointType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumePointType

template<class IntensityType = double>

typedef InputProjectionVolumeType::RegionType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumeRegionType

template<class IntensityType = double>

typedef InputProjectionVolumeType::SizeType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumeSizeType

template<class IntensityType = double>

typedef InputProjectionVolumeType::SpacingType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumeSpacingType

template<class IntensityType = double>

typedef Image<IntensityType, 3> itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::InputProjectionVolumeType

Intensity type has to be double because the optimizer expects the parameters (intensities) to be double

template<class IntensityType = double>

typedef MetricType::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::MetricPointer

template<class IntensityType = double>

typedef SimultaneousReconstructionRegistrationMetric<IntensityType> itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::MetricType

The type of the metric.

template<class IntensityType = double>

typedef OptimizerType::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::OptimizerPointer

template<class IntensityType = double>

typedef SingleValuedNonLinearOptimizer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::OptimizerType

Type of the optimizer.

template<class IntensityType = double>

typedef MetricType::ParametersType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ParametersType

Type of the optimisation parameters (reconstructed intensities). This is the same type used to represent the search space of the optimization algorithm

template<class IntensityType = double>

typedef SmartPointer<Self> itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::Pointer

template<class IntensityType = double>

typedef ProjectionGeometryType::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ProjectionGeometryPointer

template<class IntensityType = double>

typedef itk::ProjectionGeometry<IntensityType> itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ProjectionGeometryType

The projection geometry type.

template<class IntensityType = double>

typedef ReconstructionType::IndexType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionIndexType

template<class IntensityType = double>

typedef ReconstructionOutputType::ConstPointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionOutputConstPointer

template<class IntensityType = double>

typedef ReconstructionOutputType::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionOutputPointer

template<class IntensityType = double>

typedef ReconstructionType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionOutputType

Type for the output: Using Decorator pattern for enabling the reconstructed volume to be passed in the data pipeline

template<class IntensityType = double>

typedef ReconstructionType::PixelType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionPixelType

template<class IntensityType = double>

typedef ReconstructionType::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionPointer

template<class IntensityType = double>

typedef ReconstructionType::PointType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionPointType

template<class IntensityType = double>

typedef ReconstructionType::RegionType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionRegionType

template<class IntensityType = double>

typedef ReconstructionType::SizeType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionSizeType

template<class IntensityType = double>

typedef ReconstructionType::SpacingType itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionSpacingType

template<class IntensityType = double>

typedef Image<IntensityType, 3> itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::ReconstructionType

template<class IntensityType = double>

typedef SimultaneousReconstructionAndRegistrationMethod itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::Self

Standard class typedefs.

template<class IntensityType = double>

typedef SimultaneousReconAndRegnUpdateCommand::Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SimultaneousReconAndRegnUpdateCommandPointer

template<class IntensityType = double>

typedef itk::SimultaneousReconAndRegnUpdateCommand itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SimultaneousReconAndRegnUpdateCommandType

template<class IntensityType = double>

typedef ProcessObject itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::Superclass

Constructor & Destructor Documentation

template<class IntensityType = double>

itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SimultaneousReconstructionAndRegistrationMethod ( )

protected

template<class IntensityType = double>

virtual itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::~SimultaneousReconstructionAndRegistrationMethod ( )

inlineprotectedvirtual

Member Function Documentation

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GenerateData ( )

protected

Method invoked by the pipeline in order to trigger the computation of the reconstruction.

template<class IntensityType = double>

virtual void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GenerateOutputInformation ( )

inlineprotectedvirtual

We avoid propagating the input region to the output by overloading this function

template<class IntensityType = double>

virtual const char* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

template<class IntensityType = double>

bool itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetFlagUpdateReconEstimateWithAverage ( void  )

inline

template<class IntensityType = double>

InputProjectionVolumeType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetInput

(

)

Returns the input image

template<class IntensityType = double>

virtual MetricType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetMetric ( )

virtual

template<class IntensityType = double>

unsigned long itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetMTime

(

)

const

Method to return the latest modified time of this object or any of its cached ivars

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetNumberOfReconRegnIterations ( void  )

inline

Get the number of combined registration-reconstruction iterations to perform.

template<class IntensityType = double>

virtual OptimizerType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetOptimizer ( )

virtual

template<class IntensityType = double>

ReconstructionOutputType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetOutput

(

)

Returns the image resulting from the reconstruction process

template<class IntensityType = double>

virtual ProjectionGeometryType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetProjectionGeometry ( )

virtual

template<class IntensityType = double>

ReconstructionOutputType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetReconstructedVolume

(

)

const

Returns the image resulting from the reconstruction process

template<class IntensityType = double>

virtual SimultaneousReconAndRegnUpdateCommandType* itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::GetSimultaneousReconAndRegnUpdateCommand ( )

virtual

template<class IntensityType = double>

virtual void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::Initialise ( ) throw ( ExceptionObject )

virtual

Initialise by setting the interconnects between the components.

template<class IntensityType = double>

virtual DataObjectPointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::MakeOutput ( unsigned int  idx )

virtual

Make a DataObject of the correct type to be used as the specified output.

template<class IntensityType = double>

static Pointer itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::New ( )

static

Method for creation through the object factory.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protected

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetFlagUpdateReconEstimateWithAverage ( bool  flag )

inline

Set/Get the 'update 3D reconstruction estimate volume with average' flag

template<class IntensityType = double>

bool itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetInputFixedImageProjections

(

InputProjectionVolumeType *

imFixedProjections

)

Set the fixed image volume of projection images.

template<class IntensityType = double>

bool itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetInputMovingImageProjections

(

InputProjectionVolumeType *

imMovingProjections

)

Set the moving image volume of projection images.

template<class IntensityType = double>

virtual void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetMetric ( MetricType *  _arg )

virtual

Set/Get the Metric.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetNumberOfReconRegnIterations ( unsigned int  n )

inline

Set the number of combined registration-reconstruction iterations to perform.

template<class IntensityType = double>

virtual void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetOptimizer ( OptimizerType *  _arg )

virtual

Set/Get the Optimizer.

template<class IntensityType = double>

virtual void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetProjectionGeometry ( ProjectionGeometryType *  _arg )

virtual

Set/Get the Projection Geometry.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetReconEstimate

(

ReconstructionType *

im3D

)

Set the 3D reconstruction estimate volume.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetReconstructedVolumeOrigin ( ReconstructionPointType &  reconOrigin )

inline

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetReconstructedVolumeSize ( ReconstructionSizeType &  reconSize )

inline

Set the size, resolution and origin of the reconstructed image.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetReconstructedVolumeSpacing ( ReconstructionSpacingType &  reconSpacing )

inline

template<class IntensityType = double>

virtual void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::SetSimultaneousReconAndRegnUpdateCommand ( SimultaneousReconAndRegnUpdateCommandType *  _arg )

virtual

Set/Get the SimultaneousReconAndRegnUpdateCommand.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::StartOptimization ( void  )

protected

Method that initiates the optimization process. This method should not be called directly by the users. Instead, this method is intended to be invoked internally by the StartReconstruction() which is in turn invoked by the Update() method.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::StartReconstruction ( void  )

protected

Method that initiates the reconstruction. This will Initialise and ensure that all inputs the registration needs are in place, via a call to Initialise() will then start the optimization process via a call to StartOptimization()

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::UpdateInitialParameters

(

void

)

Update the initial optimisation parameters.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::UpdateReconstructionEstimate

(

ReconstructionType *

im3D

)

Update the 3D reconstruction estimate volume.

template<class IntensityType = double>

void itk::SimultaneousReconstructionAndRegistrationMethod< IntensityType >::UpdateReconstructionEstimateWithAverage

(

ReconstructionType *

im3D

)

Update the 3D reconstruction estimate volume with the average of the existing estimate and the supplied volume.

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The documentation for this class was generated from the following file:

• itkSimultaneousReconstructionAndRegistrationMethod.h