Base class for classes that manipulate the segmented volume before it gets to the Cortical Thickness Estimation. More...

Inheritance diagram for itk::BaseCTESegmentationFilter< TImageType >:

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Collaboration diagram for itk::BaseCTESegmentationFilter< TImageType >:

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Public Types
typedef BaseCTESegmentationFilter	Self

typedef BaseCTEFilter< TImageType >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::InputImageType	InputImageType

typedef Superclass::InputPixelType	InputPixelType

typedef Superclass::InputIndexType	InputIndexType

typedef Superclass::InputSizeType	InputSizeType

typedef Superclass::InputImagePointer	InputImagePointer

typedef Superclass::InputImageConstPointer	InputImageConstPointer

typedef Superclass::OutputPixelType	OutputPixelType

typedef Superclass::OutputImageType	OutputImageType

typedef Superclass::OutputImagePointer	OutputImagePointer

typedef Superclass::OutputImageConstPointer	OutputImageConstPointer

typedef Superclass::OutputSizeType	OutputSizeType

Public Types inherited from itk::BaseCTEFilter< TImageType >
typedef BaseCTEFilter	Self

typedef ImageToImageFilter < TImageType, TImageType >	Superclass

typedef SmartPointer< Self >	Pointer

typedef SmartPointer< const Self >	ConstPointer

typedef TImageType	InputImageType

typedef InputImageType::PixelType	InputPixelType

typedef InputImageType::IndexType	InputIndexType

typedef InputImageType::SizeType	InputSizeType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputPixelType	OutputPixelType

typedef Image< OutputPixelType, TImageType::ImageDimension >	OutputImageType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::ConstPointer	OutputImageConstPointer

typedef OutputImageType::SizeType	OutputSizeType

Public Member Functions
virtual const char *	GetClassName () const

virtual void	SetTrustPVMaps (bool _arg)

virtual bool	GetTrustPVMaps ()

Public Member Functions inherited from itk::BaseCTEFilter< TImageType >
	itkStaticConstMacro (Dimension, unsigned int, TImageType::ImageDimension)

virtual InputPixelType	GetGreyMatterLabel ()

virtual InputPixelType	GetWhiteMatterLabel ()

virtual InputPixelType	GetExtraCerebralMatterLabel ()

void	SetLabelThresholds (InputPixelType greyMatterLabel, InputPixelType whiteMatterLabel, InputPixelType extraCerebralMatterLabel)

virtual bool	GetUserHasSetTheLabelThresholds ()

Protected Member Functions
	BaseCTESegmentationFilter ()

virtual	~BaseCTESegmentationFilter ()

virtual void	PrintSelf (std::ostream &, Indent) const

virtual void	CheckOrAssignLabels ()

virtual void	CheckPVMap (std::string name, const InputImageType *image)

Protected Member Functions inherited from itk::BaseCTEFilter< TImageType >
	BaseCTEFilter ()

virtual	~BaseCTEFilter ()

virtual void	GenerateInputRequestedRegion ()

virtual void	EnlargeOutputRequestedRegion (DataObject *itkNotUsed)

virtual void	CheckInputsAndOutputsSameSize ()

virtual bool	IsOnBoundary (const InputImageType *image, const InputIndexType &index, const InputPixelType boundaryValue, bool useFullyConnected)

virtual bool	IsOnCSFBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)

virtual bool	IsOnWMBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)

virtual bool	IsOnGMBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)

Additional Inherited Members
Protected Attributes inherited from itk::BaseCTEFilter< TImageType >
InputPixelType	m_GreyMatterLabel

InputPixelType	m_WhiteMatterLabel

InputPixelType	m_ExtraCerebralMatterLabel

bool	m_UserHasSetTheLabelThresholds

Detailed Description

template<class TImageType>
class itk::BaseCTESegmentationFilter< TImageType >

Base class for classes that manipulate the segmented volume before it gets to the Cortical Thickness Estimation.

For example, as of right now, we have two derived classes. CheckForThreeLevelsFilter simply checks that the input segmented volume has exactly three labels, but passes data straight through, whereas the CorrectGMUsingPVMapFilter does the same check for three levels, and then modifies the grey matter according to the grey matter PV map. Hence the code for checking for three levels is in this class.

See also: CorrectGMUsingPVMapFilter; CheckForThreeLevelsFilter

Member Typedef Documentation

template<class TImageType >

typedef SmartPointer<const Self> itk::BaseCTESegmentationFilter< TImageType >::ConstPointer

template<class TImageType >

typedef Superclass::InputImageConstPointer itk::BaseCTESegmentationFilter< TImageType >::InputImageConstPointer

template<class TImageType >

typedef Superclass::InputImagePointer itk::BaseCTESegmentationFilter< TImageType >::InputImagePointer

template<class TImageType >

typedef Superclass::InputImageType itk::BaseCTESegmentationFilter< TImageType >::InputImageType

Image typedef support.

template<class TImageType >

typedef Superclass::InputIndexType itk::BaseCTESegmentationFilter< TImageType >::InputIndexType

template<class TImageType >

typedef Superclass::InputPixelType itk::BaseCTESegmentationFilter< TImageType >::InputPixelType

template<class TImageType >

typedef Superclass::InputSizeType itk::BaseCTESegmentationFilter< TImageType >::InputSizeType

template<class TImageType >

typedef Superclass::OutputImageConstPointer itk::BaseCTESegmentationFilter< TImageType >::OutputImageConstPointer

template<class TImageType >

typedef Superclass::OutputImagePointer itk::BaseCTESegmentationFilter< TImageType >::OutputImagePointer

template<class TImageType >

typedef Superclass::OutputImageType itk::BaseCTESegmentationFilter< TImageType >::OutputImageType

template<class TImageType >

typedef Superclass::OutputPixelType itk::BaseCTESegmentationFilter< TImageType >::OutputPixelType

template<class TImageType >

typedef Superclass::OutputSizeType itk::BaseCTESegmentationFilter< TImageType >::OutputSizeType

template<class TImageType >

typedef SmartPointer<Self> itk::BaseCTESegmentationFilter< TImageType >::Pointer

template<class TImageType >

typedef BaseCTESegmentationFilter itk::BaseCTESegmentationFilter< TImageType >::Self

Standard "Self" & Superclass typedef.

template<class TImageType >

typedef BaseCTEFilter< TImageType > itk::BaseCTESegmentationFilter< TImageType >::Superclass

Constructor & Destructor Documentation

template<class TImageType >

itk::BaseCTESegmentationFilter< TImageType >::BaseCTESegmentationFilter ( )

protected

template<class TImageType >

virtual itk::BaseCTESegmentationFilter< TImageType >::~BaseCTESegmentationFilter ( )

inlineprotectedvirtual

Member Function Documentation

template<class TImageType >

virtual void itk::BaseCTESegmentationFilter< TImageType >::CheckOrAssignLabels ( )

protectedvirtual

Checks that we have specified 3 labels (GM, WM, CSF), and that the input image contains JUST those 3 values, or if they are unspecified, we calculate them by counting how many of each pixel there are, and assigning the most to CSF, the least to GM, and the middle quantity to WM.

template<class TImageType >

virtual void itk::BaseCTESegmentationFilter< TImageType >::CheckPVMap	(	std::string	name,
		const InputImageType *	image
	)

protectedvirtual

If m_TrustPVMaps is false, we whizz through image, checking that all values are >= 0 and <= 1. If they are not an exception is thrown. If m_TrustPVMaps is true, this method does nothing.

template<class TImageType >

virtual const char* itk::BaseCTESegmentationFilter< TImageType >::GetClassName ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::BaseCTEFilter< TImageType >.

Reimplemented in itk::CorrectGMUsingPVMapFilter< TImageType >, itk::CorrectGMUsingNeighbourhoodFilter< TImageType >, itk::CheckForThreeLevelsFilter< TImageType >, itk::AddOneLayerOfGreyMatterFilter< TImageType >, and itk::SetGreyBoundaryToWhiteOrCSFFilter< TImageType, TScalarType, NDimensions >.

template<class TImageType >

virtual bool itk::BaseCTESegmentationFilter< TImageType >::GetTrustPVMaps ( )

virtual

template<class TImageType >