itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions > Class Template Reference

Base class for filters that calculate thicknesses based on Laplacian streamlines. More...

Inheritance diagram for itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >:

Collaboration diagram for itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >:

Public Types
typedef BaseCTEStreamlinesFilter	Self
typedef BaseCTEFilter< TImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Vector< TScalarType, NDimensions >	InputVectorImagePixelType
typedef Image < InputVectorImagePixelType, NDimensions >	InputVectorImageType
typedef InputVectorImageType::Pointer	InputVectorImagePointer
typedef InputVectorImageType::ConstPointer	InputVectorImageConstPointer
typedef TScalarType	InputScalarImagePixelType
typedef Image < InputScalarImagePixelType, NDimensions >	InputScalarImageType
typedef InputScalarImageType::PointType	InputScalarImagePointType
typedef InputScalarImageType::Pointer	InputScalarImagePointer
typedef InputScalarImageType::IndexType	InputScalarImageIndexType
typedef InputScalarImageType::ConstPointer	InputScalarImageConstPointer
typedef InputScalarImageType::RegionType	InputScalarImageRegionType
typedef InputScalarImageType	OutputImageType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::ConstPointer	OutputImageConstPointer
typedef VectorInterpolateImageFunction < InputVectorImageType,TScalarType >	VectorInterpolatorType
typedef VectorInterpolatorType::Pointer	VectorInterpolatorPointer
typedef VectorInterpolatorType::PointType	VectorInterpolatorPointType
typedef InterpolateImageFunction < InputScalarImageType,TScalarType >	ScalarInterpolatorType
typedef ScalarInterpolatorType::Pointer	ScalarInterpolatorPointer
typedef ScalarInterpolatorType::PointType	ScalarInterpolatorPointType
Public Types inherited from itk::BaseCTEFilter< TImageType >
typedef BaseCTEFilter	Self
typedef ImageToImageFilter < TImageType, TImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TImageType	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef InputImageType::IndexType	InputIndexType
typedef InputImageType::SizeType	InputSizeType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputPixelType	OutputPixelType
typedef Image< OutputPixelType, TImageType::ImageDimension >	OutputImageType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::ConstPointer	OutputImageConstPointer
typedef OutputImageType::SizeType	OutputSizeType

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetLowVoltage (InputScalarImagePixelType _arg)
virtual InputScalarImagePixelType	GetLowVoltage ()
virtual void	SetHighVoltage (InputScalarImagePixelType _arg)
virtual InputScalarImagePixelType	GetHighVoltage ()
virtual void	SetVectorInterpolator (VectorInterpolatorType *_arg)
virtual const VectorInterpolatorType *	GetVectorInterpolator ()
virtual void	SetScalarInterpolator (ScalarInterpolatorType *_arg)
virtual const ScalarInterpolatorType *	GetScalarInterpolator ()
Public Member Functions inherited from itk::BaseCTEFilter< TImageType >
	itkStaticConstMacro (Dimension, unsigned int, TImageType::ImageDimension)
virtual InputPixelType	GetGreyMatterLabel ()
virtual InputPixelType	GetWhiteMatterLabel ()
virtual InputPixelType	GetExtraCerebralMatterLabel ()
void	SetLabelThresholds (InputPixelType greyMatterLabel, InputPixelType whiteMatterLabel, InputPixelType extraCerebralMatterLabel)
virtual bool	GetUserHasSetTheLabelThresholds ()

Protected Member Functions
	BaseCTEStreamlinesFilter ()
	~BaseCTEStreamlinesFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
Protected Member Functions inherited from itk::BaseCTEFilter< TImageType >
	BaseCTEFilter ()
virtual	~BaseCTEFilter ()
virtual void	GenerateInputRequestedRegion ()
virtual void	EnlargeOutputRequestedRegion (DataObject *itkNotUsed)
virtual void	CheckInputsAndOutputsSameSize ()
virtual bool	IsOnBoundary (const InputImageType *image, const InputIndexType &index, const InputPixelType boundaryValue, bool useFullyConnected)
virtual bool	IsOnCSFBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)
virtual bool	IsOnWMBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)
virtual bool	IsOnGMBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)

Protected Attributes
VectorInterpolatorPointer	m_VectorInterpolator
ScalarInterpolatorPointer	m_ScalarInterpolator
InputScalarImagePixelType	m_LowVoltage
InputScalarImagePixelType	m_HighVoltage
Protected Attributes inherited from itk::BaseCTEFilter< TImageType >
InputPixelType	m_GreyMatterLabel
InputPixelType	m_WhiteMatterLabel
InputPixelType	m_ExtraCerebralMatterLabel
bool	m_UserHasSetTheLabelThresholds

Detailed Description

template<class TImageType, typename TScalarType = double, unsigned int NDimensions = 3>
class itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >

Base class for filters that calculate thicknesses based on Laplacian streamlines.

See also

IntegrateStreamlinesFilter

RelaxStreamlinesFilter

LagrangianInitializedRelaxStreamlinesFilter

OrderedTraversalStreamlinesFilter

Member Typedef Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef SmartPointer<const Self> itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::ConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::ConstPointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::IndexType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageIndexType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef TScalarType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImagePixelType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::Pointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImagePointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::PointType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImagePointType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::RegionType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageRegionType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Image< InputScalarImagePixelType, NDimensions > itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputVectorImageType::ConstPointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImageConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Vector< TScalarType, NDimensions > itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImagePixelType

Standard typedefs.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputVectorImageType::Pointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImagePointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Image< InputVectorImagePixelType, NDimensions > itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::ConstPointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImageConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::PixelType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImagePixelType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::Pointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImagePointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef SmartPointer<Self> itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::Pointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef ScalarInterpolatorType::Pointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::ScalarInterpolatorPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef ScalarInterpolatorType::PointType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::ScalarInterpolatorPointType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InterpolateImageFunction< InputScalarImageType ,TScalarType > itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::ScalarInterpolatorType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef BaseCTEStreamlinesFilter itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::Self

Standard "Self" typedef.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef BaseCTEFilter< TImageType > itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::Superclass

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef VectorInterpolatorType::Pointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::VectorInterpolatorPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef VectorInterpolatorType::PointType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::VectorInterpolatorPointType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef VectorInterpolateImageFunction<InputVectorImageType ,TScalarType > itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::VectorInterpolatorType

Constructor & Destructor Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::BaseCTEStreamlinesFilter ( )

protected

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::~BaseCTEStreamlinesFilter ( )

inlineprotected

Member Function Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual const char* itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::BaseCTEFilter< TImageType >.

Reimplemented in itk::IntegrateStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::RelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::LagrangianInitializedRelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::HighResRelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >, and itk::JorgesInitializationRelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual InputScalarImagePixelType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::GetHighVoltage ( )

virtual

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual InputScalarImagePixelType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::GetLowVoltage ( )

virtual

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual const ScalarInterpolatorType* itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::GetScalarInterpolator ( )

virtual

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual const VectorInterpolatorType* itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::GetVectorInterpolator ( )

virtual

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

void itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::PrintSelf ( std::ostream &  , Indent    ) const

protectedvirtual

Standard Print Self.

Reimplemented from itk::BaseCTEFilter< TImageType >.

Reimplemented in itk::LagrangianInitializedRelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::RelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::IntegrateStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >, itk::HighResRelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >, and itk::JorgesInitializationRelaxStreamlinesFilter< TImageType, TScalarType, NDimensions >.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual void itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::SetHighVoltage ( InputScalarImagePixelType  _arg )

virtual

Set/Get the High Voltage threshold, defaults to 10000. Only pixels < HighVoltage are solved.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual void itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::SetLowVoltage ( InputScalarImagePixelType  _arg )

virtual

Set/Get the Low Voltage threshold, defaults to 0. Only pixels > LowVoltage are solved.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual void itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::SetScalarInterpolator ( ScalarInterpolatorType *  _arg )

virtual

Set the interpolator for the scalar field, so we could have Bspline for instance. Default is Nearest Neighbour.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual void itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::SetVectorInterpolator ( VectorInterpolatorType *  _arg )

virtual

Set the interpolator (so in future, we could have BSpline vector field interpolation). Default is Nearest Neighbour.

Member Data Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

InputScalarImagePixelType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::m_HighVoltage

protected

The high voltage value (see paper), defaults to 10000.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

InputScalarImagePixelType itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::m_LowVoltage

protected

The low voltage value (see paper), defaults to 0.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

ScalarInterpolatorPointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::m_ScalarInterpolator

protected

The interpolator for scalar field.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

VectorInterpolatorPointer itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >::m_VectorInterpolator

protected

The interpolator for vector field.

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The documentation for this class was generated from the following file:

• itkBaseCTEStreamlinesFilter.h