itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions > Class Template Reference

Calculates length between two boundaries, solving PDE by ordered traversal. More...

Inheritance diagram for itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >:

Collaboration diagram for itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >:

Public Types
typedef OrderedTraversalStreamlinesFilter	Self
typedef BaseCTEStreamlinesFilter < TImageType, TScalarType, NDimensions >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Vector< TScalarType, NDimensions >	InputVectorImagePixelType
typedef Image < InputVectorImagePixelType, NDimensions >	InputVectorImageType
typedef InputVectorImageType::Pointer	InputVectorImagePointer
typedef InputVectorImageType::ConstPointer	InputVectorImageConstPointer
typedef InputVectorImageType::IndexType	InputVectorImageIndexType
typedef TScalarType	InputScalarImagePixelType
typedef Image < InputScalarImagePixelType, NDimensions >	InputScalarImageType
typedef InputScalarImageType::PointType	InputScalarImagePointType
typedef InputScalarImageType::Pointer	InputScalarImagePointer
typedef InputScalarImageType::IndexType	InputScalarImageIndexType
typedef InputScalarImageType::ConstPointer	InputScalarImageConstPointer
typedef InputScalarImageType::RegionType	InputScalarImageRegionType
typedef InputScalarImageType::SizeType	InputScalarImageSizeType
typedef InputScalarImageType	OutputImageType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::ConstPointer	OutputImageConstPointer
typedef OutputImageType::IndexType	OutputImageIndexType
typedef OutputImageType::SpacingType	OutputImageSpacingType
typedef VectorInterpolateImageFunction < InputVectorImageType,TScalarType >	VectorInterpolatorType
typedef VectorInterpolatorType::Pointer	VectorInterpolatorPointer
typedef VectorInterpolatorType::PointType	VectorInterpolatorPointType
typedef InterpolateImageFunction < InputScalarImageType,TScalarType >	ScalarInterpolatorType
typedef ScalarInterpolatorType::Pointer	ScalarInterpolatorPointer
typedef ScalarInterpolatorType::PointType	ScalarInterpolatorPointType
typedef Image< unsigned char, Dimension >	StatusImageType
Public Types inherited from itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >
typedef BaseCTEStreamlinesFilter	Self
typedef BaseCTEFilter< TImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef Vector< TScalarType, NDimensions >	InputVectorImagePixelType
typedef Image < InputVectorImagePixelType, NDimensions >	InputVectorImageType
typedef InputVectorImageType::Pointer	InputVectorImagePointer
typedef InputVectorImageType::ConstPointer	InputVectorImageConstPointer
typedef TScalarType	InputScalarImagePixelType
typedef Image < InputScalarImagePixelType, NDimensions >	InputScalarImageType
typedef InputScalarImageType::PointType	InputScalarImagePointType
typedef InputScalarImageType::Pointer	InputScalarImagePointer
typedef InputScalarImageType::IndexType	InputScalarImageIndexType
typedef InputScalarImageType::ConstPointer	InputScalarImageConstPointer
typedef InputScalarImageType::RegionType	InputScalarImageRegionType
typedef InputScalarImageType	OutputImageType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::ConstPointer	OutputImageConstPointer
typedef VectorInterpolateImageFunction < InputVectorImageType,TScalarType >	VectorInterpolatorType
typedef VectorInterpolatorType::Pointer	VectorInterpolatorPointer
typedef VectorInterpolatorType::PointType	VectorInterpolatorPointType
typedef InterpolateImageFunction < InputScalarImageType,TScalarType >	ScalarInterpolatorType
typedef ScalarInterpolatorType::Pointer	ScalarInterpolatorPointer
typedef ScalarInterpolatorType::PointType	ScalarInterpolatorPointType
Public Types inherited from itk::BaseCTEFilter< TImageType >
typedef BaseCTEFilter	Self
typedef ImageToImageFilter < TImageType, TImageType >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TImageType	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef InputImageType::IndexType	InputIndexType
typedef InputImageType::SizeType	InputSizeType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputPixelType	OutputPixelType
typedef Image< OutputPixelType, TImageType::ImageDimension >	OutputImageType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::ConstPointer	OutputImageConstPointer
typedef OutputImageType::SizeType	OutputSizeType

Public Member Functions
virtual const char *	GetClassName () const
	itkStaticConstMacro (Dimension, unsigned int, NDimensions)
void	SetScalarImage (const InputScalarImageType *image)
void	SetVectorImage (const InputVectorImageType *image)
Public Member Functions inherited from itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >
virtual void	SetLowVoltage (InputScalarImagePixelType _arg)
virtual InputScalarImagePixelType	GetLowVoltage ()
virtual void	SetHighVoltage (InputScalarImagePixelType _arg)
virtual InputScalarImagePixelType	GetHighVoltage ()
virtual void	SetVectorInterpolator (VectorInterpolatorType *_arg)
virtual const VectorInterpolatorType *	GetVectorInterpolator ()
virtual void	SetScalarInterpolator (ScalarInterpolatorType *_arg)
virtual const ScalarInterpolatorType *	GetScalarInterpolator ()
Public Member Functions inherited from itk::BaseCTEFilter< TImageType >
	itkStaticConstMacro (Dimension, unsigned int, TImageType::ImageDimension)
virtual InputPixelType	GetGreyMatterLabel ()
virtual InputPixelType	GetWhiteMatterLabel ()
virtual InputPixelType	GetExtraCerebralMatterLabel ()
void	SetLabelThresholds (InputPixelType greyMatterLabel, InputPixelType whiteMatterLabel, InputPixelType extraCerebralMatterLabel)
virtual bool	GetUserHasSetTheLabelThresholds ()

Static Public Member Functions
static Pointer	New ()

Protected Types
typedef std::pair< TScalarType, InputScalarImageIndexType >	Pair
typedef std::multimap < TScalarType, InputScalarImageIndexType >	MinMap
typedef MinMap::iterator	MinMapIterator
typedef MinMap::reverse_iterator	MinMapReverseIterator

Protected Member Functions
	OrderedTraversalStreamlinesFilter ()
	~OrderedTraversalStreamlinesFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	GenerateData ()
Protected Member Functions inherited from itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >
	BaseCTEStreamlinesFilter ()
	~BaseCTEStreamlinesFilter ()
Protected Member Functions inherited from itk::BaseCTEFilter< TImageType >
	BaseCTEFilter ()
virtual	~BaseCTEFilter ()
virtual void	GenerateInputRequestedRegion ()
virtual void	EnlargeOutputRequestedRegion (DataObject *itkNotUsed)
virtual void	CheckInputsAndOutputsSameSize ()
virtual bool	IsOnBoundary (const InputImageType *image, const InputIndexType &index, const InputPixelType boundaryValue, bool useFullyConnected)
virtual bool	IsOnCSFBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)
virtual bool	IsOnWMBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)
virtual bool	IsOnGMBoundary (const InputImageType *image, const InputIndexType &index, bool useFullyConnected)

Additional Inherited Members
Protected Attributes inherited from itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >
VectorInterpolatorPointer	m_VectorInterpolator
ScalarInterpolatorPointer	m_ScalarInterpolator
InputScalarImagePixelType	m_LowVoltage
InputScalarImagePixelType	m_HighVoltage
Protected Attributes inherited from itk::BaseCTEFilter< TImageType >
InputPixelType	m_GreyMatterLabel
InputPixelType	m_WhiteMatterLabel
InputPixelType	m_ExtraCerebralMatterLabel
bool	m_UserHasSetTheLabelThresholds

Detailed Description

template<class TImageType, typename TScalarType = double, unsigned int NDimensions = 3>
class itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >

Calculates length between two boundaries, solving PDE by ordered traversal.

This filter implements algorithm 2) in Yezzi and Prince 2003 , IEEE TMI Vol. 22, No. 10, p 1332-1339. The first input should be a scalar image, such as the output of itkLaplacianSolverImageFilter. The second image should be the vector field of the gradient of the first input.

In this implementation, you specify the the voltage potentials that your Laplacian was solved on. This enables the filter to set the boundaries correctly. Only voxels that are > LowVoltage and < HighVoltage are solved.

See also

BaseStreamlinesFilter

IntegrateStreamlinesFilter

RelaxStreamlinesFilter

Member Typedef Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef SmartPointer<const Self> itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::ConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::ConstPointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::IndexType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageIndexType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef TScalarType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImagePixelType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::Pointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImagePointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::PointType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImagePointType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::RegionType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageRegionType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType::SizeType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageSizeType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Image< InputScalarImagePixelType, NDimensions > itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputScalarImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputVectorImageType::ConstPointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImageConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputVectorImageType::IndexType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImageIndexType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Vector< TScalarType, NDimensions > itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImagePixelType

Standard typedefs.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputVectorImageType::Pointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImagePointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Image< InputVectorImagePixelType, NDimensions > itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::InputVectorImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef std::multimap<TScalarType, InputScalarImageIndexType> itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::MinMap

protected

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef MinMap::iterator itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::MinMapIterator

protected

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef MinMap::reverse_iterator itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::MinMapReverseIterator

protected

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::ConstPointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImageConstPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::IndexType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImageIndexType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::PixelType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImagePixelType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::Pointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImagePointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OutputImageType::SpacingType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImageSpacingType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InputScalarImageType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OutputImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef std::pair<TScalarType, InputScalarImageIndexType> itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::Pair

protected

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef SmartPointer<Self> itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::Pointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef ScalarInterpolatorType::Pointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::ScalarInterpolatorPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef ScalarInterpolatorType::PointType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::ScalarInterpolatorPointType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef InterpolateImageFunction< InputScalarImageType ,TScalarType > itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::ScalarInterpolatorType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef OrderedTraversalStreamlinesFilter itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::Self

Standard "Self" typedef.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef Image<unsigned char, Dimension> itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::StatusImageType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef BaseCTEStreamlinesFilter<TImageType, TScalarType, NDimensions> itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::Superclass

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef VectorInterpolatorType::Pointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::VectorInterpolatorPointer

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef VectorInterpolatorType::PointType itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::VectorInterpolatorPointType

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

typedef VectorInterpolateImageFunction<InputVectorImageType ,TScalarType > itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::VectorInterpolatorType

Constructor & Destructor Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::OrderedTraversalStreamlinesFilter ( )

protected

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::~OrderedTraversalStreamlinesFilter ( )

inlineprotected

Member Function Documentation

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual void itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::GenerateData ( )

protectedvirtual

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

virtual const char* itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::GetClassName ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::itkStaticConstMacro	(	Dimension	,
		unsigned	int,
		NDimensions
	)

Get the number of dimensions we are working in.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

static Pointer itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::New ( )

static

Method for creation through the object factory.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

void itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::PrintSelf ( std::ostream &  , Indent    ) const

protectedvirtual

Standard Print Self.

Reimplemented from itk::BaseCTEStreamlinesFilter< TImageType, TScalarType, NDimensions >.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

void itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::SetScalarImage ( const InputScalarImageType *  image )

inline

Sets the scalar (Laplacian) image, at input 0.

template<class TImageType , typename TScalarType = double, unsigned int NDimensions = 3>

void itk::OrderedTraversalStreamlinesFilter< TImageType, TScalarType, NDimensions >::SetVectorImage ( const InputVectorImageType *  image )

inline

Sets the vector image, at input 1.

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The documentation for this class was generated from the following file:

• itkOrderedTraversalStreamlinesFilter.h