itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage > Class Template Reference

Calculate the boundary shift integral. More...

Inheritance diagram for itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >:

Collaboration diagram for itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >:

Public Types
typedef BoundaryShiftIntegralCalculator	Self
typedef Object	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage::Pointer	TInputImagePointer
typedef TInputMask::Pointer	TInputMaskPointer
typedef itk::Image< int, 3 >	IntImageType

Public Member Functions
virtual const char *	GetClassName () const
virtual double	GetBoundaryShiftIntegral ()
virtual void	SetBaselineImage (TInputImagePointer _arg)
virtual void	SetBaselineMask (TInputMaskPointer _arg)
virtual void	SetRepeatImage (TInputImagePointer _arg)
virtual void	SetRepeatMask (TInputMaskPointer _arg)
virtual void	SetNumberOfErosion (unsigned int _arg)
virtual void	SetNumberOfDilation (unsigned int _arg)
virtual void	SetNumberOfSubROIDilation (unsigned int _arg)
virtual void	SetSubROIMask (TInputMaskPointer _arg)
virtual void	SetUpperCutoffValue (double _arg)
virtual void	SetLowerCutoffValue (double _arg)
virtual void	SetBaselineIntensityNormalisationFactor (double _arg)
virtual void	SetRepeatIntensityNormalisationFactor (double _arg)
virtual void	SetPaddingValue (typename TInputMask::PixelType _arg)
virtual TInputMaskPointer	GetBSIMask ()
virtual void	SetBSIMask (TInputMaskPointer _arg)
virtual TOutputImage::Pointer	GetBSIMap ()
virtual TInputImagePointer	GetBSIMapSIENAStyle ()
virtual TInputImagePointer	GetXORMap ()
virtual void	SetProbabilisticBSI (unsigned int _arg)
virtual void	Compute (void)
void	PrintSelf (std::ostream &os, Indent indent) const override

Static Public Member Functions
static Pointer	New ()
static void	PerformLinearRegression (const std::vector< double > &x, const std::vector< double > &y, double *slope, double *intercept)

Protected Member Functions
	BoundaryShiftIntegralCalculator ()
virtual	~BoundaryShiftIntegralCalculator ()
virtual void	ComputeBSIMask (void)
virtual void	ComputeGBSIMask (void)
virtual void	ComputeLedigMask (void)
virtual void	IntegrateOverBSIMask (void) throw (ExceptionObject)
void	ComputeErodedIntersectMask (void)
void	ComputeDilatedUnionMask (void)
void	ComputePORandPANDMask (void)
void	ComputePORandPANDMaskLedig (void)

Protected Attributes
double	m_BoundaryShiftIntegral
TInputImagePointer	m_BaselineImage
TInputMaskPointer	m_BaselineMask
TInputImagePointer	m_RepeatImage
TInputMaskPointer	m_RepeatMask
unsigned int	m_NumberOfSubROIDilation
TInputMaskPointer	m_SubROIMask
unsigned int	m_NumberOfErosion
IntImageType::Pointer	m_ErodedIntersectMask
unsigned int	m_NumberOfDilation
IntImageType::Pointer	m_DilatedUnionMask
TInputMask::PixelType	m_PaddingValue
TInputMaskPointer	m_BSIMask
double	m_UpperCutoffValue
double	m_LowerCutoffValue
double	m_BaselineIntensityNormalisationFactor
double	m_RepeatIntensityNormalisationFactor
TOutputImage::Pointer	m_BSIMap
TInputImagePointer	m_BSIMapSIENAStyle
TInputImagePointer	m_XORMap
unsigned int	m_ProbabilisticBSI
IntImageType::Pointer	m_BaselineMaskInt
IntImageType::Pointer	m_RepeatMaskInt
IntImageType::Pointer	m_PORMaskInt
IntImageType::Pointer	m_PANDMaskInt
TInputMaskPointer	m_POR
TInputMaskPointer	m_PAND

Detailed Description

template<class TInputImage, class TInputMask, class TOutputImage>
class itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >

Calculate the boundary shift integral.

See the following paper for details: Freeborough PA and Fox NC, The boundary shift integral: an accurate and robust measure of cerebral volume changes from registered repeat MRI, IEEE Trans Med Imaging. 1997 Oct;16(5):623-9.

Member Typedef Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

typedef SmartPointer<const Self> itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ConstPointer

template<class TInputImage , class TInputMask , class TOutputImage >

typedef itk::Image<int, 3> itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::IntImageType

template<class TInputImage , class TInputMask , class TOutputImage >

typedef SmartPointer<Self> itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Pointer

template<class TInputImage , class TInputMask , class TOutputImage >

typedef BoundaryShiftIntegralCalculator itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Self

House keeping for the object factory.

template<class TInputImage , class TInputMask , class TOutputImage >

typedef Object itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Superclass

template<class TInputImage , class TInputMask , class TOutputImage >

typedef TInputImage::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::TInputImagePointer

Typedef the TInputImage::Pointer.

template<class TInputImage , class TInputMask , class TOutputImage >

typedef TInputMask::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::TInputMaskPointer

Constructor & Destructor Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::BoundaryShiftIntegralCalculator ( )

protected

template<class TInputImage , class TInputMask , class TOutputImage >

virtual itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::~BoundaryShiftIntegralCalculator ( )

protectedvirtual

Member Function Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Compute ( void  )

virtual

Compute the BSI.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputeBSIMask ( void  )

protectedvirtual

Compute the mask that is used for the BSI integration.

template<class TInputImage , class TInputMask , class TOutputImage >

void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputeDilatedUnionMask ( void  )

protected

Compute the dilated union mask by

1. union the input baseline and repeat masks.
2. dilate the union.

template<class TInputImage , class TInputMask , class TOutputImage >

void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputeErodedIntersectMask ( void  )

protected

Compute the eroded intersect mask by

1. intesect the input baseline and repeat masks.
2. erode the intersection.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputeGBSIMask ( void  )

protectedvirtual

Compute the mask that is used for the PBSI integration.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputeLedigMask ( void  )

protectedvirtual

Compute the mask that is used for the PBSI Ledig integration.

template<class TInputImage , class TInputMask , class TOutputImage >

void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputePORandPANDMask ( void  )

protected

template<class TInputImage , class TInputMask , class TOutputImage >

void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ComputePORandPANDMaskLedig ( void  )

protected

template<class TInputImage , class TInputMask , class TOutputImage >

virtual double itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetBoundaryShiftIntegral ( )

virtual

Macros for setting the input images and masks.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TOutputImage::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetBSIMap ( )

virtual

Reimplemented in itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TInputImagePointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetBSIMapSIENAStyle ( )

virtual

Reimplemented in itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetBSIMask ( )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual const char* itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetClassName ( ) const

virtual

Runtime information support.

Reimplemented in itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TInputImagePointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetXORMap ( )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::IntegrateOverBSIMask ( void  ) throw ( ExceptionObject )

protectedvirtual

Compute the BSI value by integrating the over the BSI mask.

Exceptions

ExceptionObject

if the lower cut off vakye is not smaller than the

Reimplemented in itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

static Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TInputMask , class TOutputImage >

static void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::PerformLinearRegression ( const std::vector< double > &  x, const std::vector< double > &  y, double *  slope, double *  intercept  )

inlinestatic

Calculate the simple linear regression between x and y.

template<class TInputImage , class TInputMask , class TOutputImage >

void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

override

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetBaselineImage ( TInputImagePointer  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetBaselineIntensityNormalisationFactor ( double  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetBaselineMask ( TInputMaskPointer  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetBSIMask ( TInputMaskPointer  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetLowerCutoffValue ( double  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetNumberOfDilation ( unsigned int  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetNumberOfErosion ( unsigned int  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetNumberOfSubROIDilation ( unsigned int  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetPaddingValue ( typename TInputMask::PixelType  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetProbabilisticBSI ( unsigned int  _arg )

virtual

Reimplemented in itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetRepeatImage ( TInputImagePointer  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetRepeatIntensityNormalisationFactor ( double  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetRepeatMask ( TInputMaskPointer  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetSubROIMask ( TInputMaskPointer  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetUpperCutoffValue ( double  _arg )

virtual

Member Data Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

TInputImagePointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BaselineImage

protected

The input baseline image for BSI calculation.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BaselineIntensityNormalisationFactor

protected

Baseline intensity normalisation factor - the basseline image intensity will be divided by this factor.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BaselineMask

protected

The input baseline mask for BSI calculation.

template<class TInputImage , class TInputMask , class TOutputImage >

IntImageType::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BaselineMaskInt

protected

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BoundaryShiftIntegral

protected

The boundary shift integral value.

template<class TInputImage , class TInputMask , class TOutputImage >

TOutputImage::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BSIMap

protected

A map of BSI values.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputImagePointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BSIMapSIENAStyle

protected

A map of BSI values in SIENA Style.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BSIMask

protected

The BSI mask, with 0 and 1, which the integration will be done.

template<class TInputImage , class TInputMask , class TOutputImage >

IntImageType::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_DilatedUnionMask

protected

The binary dilated intersect mask, with 0 and 1, from the input baseline and repeat masks.

template<class TInputImage , class TInputMask , class TOutputImage >

IntImageType::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_ErodedIntersectMask

protected

The binary eroded intersect mask, with 0 and 1, from the input baseline and repeat masks.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_LowerCutoffValue

protected

Lower cutoff value for the normalised intensity. Default: 0.75.

template<class TInputImage , class TInputMask , class TOutputImage >

unsigned int itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_NumberOfDilation

protected

The number of dilation applied to the union mask.

template<class TInputImage , class TInputMask , class TOutputImage >

unsigned int itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_NumberOfErosion

protected

The number of erosion applied to the intersect mask.

template<class TInputImage , class TInputMask , class TOutputImage >

unsigned int itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_NumberOfSubROIDilation

protected

The number of dilation applied to the sub ROI.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMask::PixelType itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_PaddingValue

protected

The padding/background value in all the input masks.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_PAND

protected

template<class TInputImage , class TInputMask , class TOutputImage >

IntImageType::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_PANDMaskInt

protected

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_POR

protected

template<class TInputImage , class TInputMask , class TOutputImage >

IntImageType::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_PORMaskInt

protected

template<class TInputImage , class TInputMask , class TOutputImage >

unsigned int itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_ProbabilisticBSI

protected

Compute probabilistic mask

template<class TInputImage , class TInputMask , class TOutputImage >

TInputImagePointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_RepeatImage

protected

The input repeat image for BSI calculation.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_RepeatIntensityNormalisationFactor

protected

Repeat intensity normalisation factor - the repeat image intensity will be divided by this factor.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_RepeatMask

protected

The input repeat mask for BSI calculation.

template<class TInputImage , class TInputMask , class TOutputImage >

IntImageType::Pointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_RepeatMaskInt

protected

template<class TInputImage , class TInputMask , class TOutputImage >

TInputMaskPointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_SubROIMask

protected

Sub ROI used to apply to the boundary BSI mask before cal.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_UpperCutoffValue

protected

Upper cutoff value for the normalised intensity. Default: 0.25.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputImagePointer itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_XORMap

protected

A map of XOR values.

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The documentation for this class was generated from the following file:

• itkBoundaryShiftIntegralCalculator.h