itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage > Class Template Reference

Calculate the boundary shift integral using double intensity window. More...

Inheritance diagram for itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >:

Collaboration diagram for itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >:

Public Types
typedef DoubleWindowBoundaryShiftIntegralCalculator	Self
typedef BoundaryShiftIntegralCalculator < TInputImage, TInputMask, TOutputImage >	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage::Pointer	TInputImagePointer
typedef TInputMask::Pointer	TInputMaskPointer
typedef double	WeightPixelType
typedef Image< WeightPixelType, TInputImage::ImageDimension >	WeightImageType
Public Types inherited from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >
typedef BoundaryShiftIntegralCalculator	Self
typedef Object	Superclass
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage::Pointer	TInputImagePointer
typedef TInputMask::Pointer	TInputMaskPointer
typedef itk::Image< int, 3 >	IntImageType

Public Member Functions
virtual const char *	GetClassName () const
virtual void	SetSecondUpperCutoffValue (double _arg)
virtual void	SetSecondLowerCutoffValue (double _arg)
virtual double	GetFirstBoundaryShiftIntegral ()
virtual double	GetSecondBoundaryShiftIntegral ()
virtual void	SetWeightImage (typename WeightImageType::Pointer _arg)
virtual void	SetMinSecondWindowWidth (double _arg)
virtual double	GetMinSecondWindowWidth ()
virtual TOutputImage::Pointer	GetSecondBSIMap ()
virtual TOutputImage::Pointer	GetBSIMap ()
virtual void	SetProbabilisticBSI (unsigned int _arg)
virtual TInputImagePointer	GetBSIMapSIENAStyle ()
Public Member Functions inherited from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >
virtual double	GetBoundaryShiftIntegral ()
virtual void	SetBaselineImage (TInputImagePointer _arg)
virtual void	SetBaselineMask (TInputMaskPointer _arg)
virtual void	SetRepeatImage (TInputImagePointer _arg)
virtual void	SetRepeatMask (TInputMaskPointer _arg)
virtual void	SetNumberOfErosion (unsigned int _arg)
virtual void	SetNumberOfDilation (unsigned int _arg)
virtual void	SetNumberOfSubROIDilation (unsigned int _arg)
virtual void	SetSubROIMask (TInputMaskPointer _arg)
virtual void	SetUpperCutoffValue (double _arg)
virtual void	SetLowerCutoffValue (double _arg)
virtual void	SetBaselineIntensityNormalisationFactor (double _arg)
virtual void	SetRepeatIntensityNormalisationFactor (double _arg)
virtual void	SetPaddingValue (typename TInputMask::PixelType _arg)
virtual TInputMaskPointer	GetBSIMask ()
virtual void	SetBSIMask (TInputMaskPointer _arg)
virtual TInputImagePointer	GetXORMap ()
virtual void	Compute (void)
void	PrintSelf (std::ostream &os, Indent indent) const override

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >
static Pointer	New ()
static void	PerformLinearRegression (const std::vector< double > &x, const std::vector< double > &y, double *slope, double *intercept)

Protected Member Functions
	DoubleWindowBoundaryShiftIntegralCalculator ()
virtual	~DoubleWindowBoundaryShiftIntegralCalculator ()
virtual void	IntegrateOverBSIMask (void) throw (ExceptionObject)
Protected Member Functions inherited from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >
	BoundaryShiftIntegralCalculator ()
virtual	~BoundaryShiftIntegralCalculator ()
virtual void	ComputeBSIMask (void)
virtual void	ComputeGBSIMask (void)
virtual void	ComputeLedigMask (void)
void	ComputeErodedIntersectMask (void)
void	ComputeDilatedUnionMask (void)
void	ComputePORandPANDMask (void)
void	ComputePORandPANDMaskLedig (void)

Protected Attributes
double	m_SecondUpperCutoffValue
double	m_SecondLowerCutoffValue
double	m_FirstBoundaryShiftIntegral
double	m_SecondBoundaryShiftIntegral
WeightImageType::Pointer	m_WeightImage
double	m_MinSecondWindowWidth
TOutputImage::Pointer	m_SecondBSIMap
TOutputImage::Pointer	m_BSIMap
TInputImagePointer	m_BSIMapSIENAStyle
unsigned int	m_ProbabilisticBSI
Protected Attributes inherited from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >
double	m_BoundaryShiftIntegral
TInputImagePointer	m_BaselineImage
TInputMaskPointer	m_BaselineMask
TInputImagePointer	m_RepeatImage
TInputMaskPointer	m_RepeatMask
unsigned int	m_NumberOfSubROIDilation
TInputMaskPointer	m_SubROIMask
unsigned int	m_NumberOfErosion
IntImageType::Pointer	m_ErodedIntersectMask
unsigned int	m_NumberOfDilation
IntImageType::Pointer	m_DilatedUnionMask
TInputMask::PixelType	m_PaddingValue
TInputMaskPointer	m_BSIMask
double	m_UpperCutoffValue
double	m_LowerCutoffValue
double	m_BaselineIntensityNormalisationFactor
double	m_RepeatIntensityNormalisationFactor
TOutputImage::Pointer	m_BSIMap
TInputImagePointer	m_BSIMapSIENAStyle
TInputImagePointer	m_XORMap
unsigned int	m_ProbabilisticBSI
IntImageType::Pointer	m_BaselineMaskInt
IntImageType::Pointer	m_RepeatMaskInt
IntImageType::Pointer	m_PORMaskInt
IntImageType::Pointer	m_PANDMaskInt
TInputMaskPointer	m_POR
TInputMaskPointer	m_PAND

Detailed Description

template<class TInputImage, class TInputMask, class TOutputImage>
class itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >

Calculate the boundary shift integral using double intensity window.

See the following paper for detais: Freeborough PA and Fox NC, The boundary shift integral: an accurate and robust measure of cerebral volume changes from registered repeat MRI, IEEE Trans Med Imaging. 1997 Oct;16(5):623-9.

Member Typedef Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

typedef SmartPointer<const Self> itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::ConstPointer

template<class TInputImage , class TInputMask , class TOutputImage >

typedef SmartPointer<Self> itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Pointer

template<class TInputImage , class TInputMask , class TOutputImage >

typedef DoubleWindowBoundaryShiftIntegralCalculator itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Self

House keeping for the object factory.

template<class TInputImage , class TInputMask , class TOutputImage >

typedef BoundaryShiftIntegralCalculator<TInputImage, TInputMask, TOutputImage> itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::Superclass

template<class TInputImage , class TInputMask , class TOutputImage >

typedef TInputImage::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::TInputImagePointer

Typedef the TInputImage::Pointer.

template<class TInputImage , class TInputMask , class TOutputImage >

typedef TInputMask::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::TInputMaskPointer

template<class TInputImage , class TInputMask , class TOutputImage >

typedef Image<WeightPixelType, TInputImage::ImageDimension> itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::WeightImageType

template<class TInputImage , class TInputMask , class TOutputImage >

typedef double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::WeightPixelType

Constructor & Destructor Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::DoubleWindowBoundaryShiftIntegralCalculator ( )

protected

template<class TInputImage , class TInputMask , class TOutputImage >

virtual itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::~DoubleWindowBoundaryShiftIntegralCalculator ( )

inlineprotectedvirtual

Member Function Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TOutputImage::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetBSIMap ( )

virtual

Reimplemented from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TInputImagePointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetBSIMapSIENAStyle ( )

virtual

Reimplemented from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual const char* itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetClassName ( ) const

virtual

Runtime information support.

Reimplemented from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetFirstBoundaryShiftIntegral ( )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetMinSecondWindowWidth ( )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetSecondBoundaryShiftIntegral ( )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual TOutputImage::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::GetSecondBSIMap ( )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::IntegrateOverBSIMask ( void  ) throw ( ExceptionObject )

protectedvirtual

Compute the BSI value by integrating the over the BSI mask.

Exceptions

ExceptionObject

if the lower cut off value is not smaller than the upper cutoff value.

Reimplemented from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

static Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetMinSecondWindowWidth ( double  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetProbabilisticBSI ( unsigned int  _arg )

virtual

Reimplemented from itk::BoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetSecondLowerCutoffValue ( double  _arg )

virtual

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetSecondUpperCutoffValue ( double  _arg )

virtual

Macros for setting the input images and masks.

template<class TInputImage , class TInputMask , class TOutputImage >

virtual void itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::SetWeightImage ( typename WeightImageType::Pointer  _arg )

virtual

Member Data Documentation

template<class TInputImage , class TInputMask , class TOutputImage >

TOutputImage::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BSIMap

protected

A map of BSI values.

template<class TInputImage , class TInputMask , class TOutputImage >

TInputImagePointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_BSIMapSIENAStyle

protected

A map of BSI values in SIENA Style.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_FirstBoundaryShiftIntegral

protected

BSI from the first intensity window.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_MinSecondWindowWidth

protected

The min. width of the second window. If less than 0, no min. width.

template<class TInputImage , class TInputMask , class TOutputImage >

unsigned int itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_ProbabilisticBSI

protected

Compute probabilistic mask

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_SecondBoundaryShiftIntegral

protected

BSI from the second intensity window.

template<class TInputImage , class TInputMask , class TOutputImage >

TOutputImage::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_SecondBSIMap

protected

A map of BSI values for the second intensity window.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_SecondLowerCutoffValue

protected

Second lower cutoff value for the normalised intensity.

template<class TInputImage , class TInputMask , class TOutputImage >

double itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_SecondUpperCutoffValue

protected

Second upper cutoff value for the normalised intensity.

template<class TInputImage , class TInputMask , class TOutputImage >

WeightImageType::Pointer itk::DoubleWindowBoundaryShiftIntegralCalculator< TInputImage, TInputMask, TOutputImage >::m_WeightImage

protected

Custom weight image.

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The documentation for this class was generated from the following file:

• itkDoubleWindowBoundaryShiftIntegralCalculator.h